Remi-Gau/bids_cookbook

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Created over 3 years ago
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Remi-Gau/bids_cookbook

Remi-Gau

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A simple recipe to convert your neuroimaging data into a BIDS dataset.

advanced_fMRI_course

List of ressources and practicals used for the fMRI data analysis course of UoB (UK) (2014-2017)

eCobidas

Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

online_neuroimaging_resources

a laundry list of resources for MRI, fMRI, EEG, MEG...

check_my_code

Because we all need pointers when it comes to make our code better.

template_matlab_analysis

A "clean code" template for MATLAB and Octave projects

matlab_clean_code_workshop

https://remi-gau.github.io/matlab_clean_code_workshop/

bids2cite

Create a citation file for a BIDS dataset.

template_PTB_experiment

template repo for a PTB experiment

datalad_aliases

Remi-Gau

analysis_high-res_pilot_nighres

bids-methods_generate_python

Jupyter Notebook

remi-gau.github.io

Personal web site based on the Jekyll Jalpc theme (discovered via Tim Van Mourik)

cookiecutter_matlab_analysis

cookiecutter_matlab_analysis

analysis_high-res_pilot001_ses-006

Octache

An Octave implementation of the mustache templating language for Octave that also happen to work with MATLAB.

AVT_analysis

Code to analyze audio-visual-tactile high-resolution 7T data

analysis_high-res_localizers

McGurk_prior_code

Code related to the fMRI experiment on the contextual modulation of the McGurk Effect

high_res_data3_convert

bids-figure

cff_example_data

datalad-binder

Jupyter Notebook

depression_nimg_schema

bidsNighres

artemis_checklist

reproschema_app_template

sub_2

art_repair

work on an octave compatible version of the SPM toolbox art_repair

bids-media_project_template

bla

fee

cobidas-eyetracker

bids-phenotype_guidelines

sub_1

submodule_autoupdate_sandbox

cobidas-PET

A prototype web-app for a checklist for PET methods reporting

laminar_tools

bids_workshop

analysis_high-res_retinotopy

retinotopy_cookbook

rvm5HTsource

miss_hit-gallery

Crawls matlab repo. Runs static analysis. Diplays the results.

Jupyter Notebook

dotfiles

dotfiles curated with https://www.chezmoi.io/

Analysis_retinotopy

dummy_beh_ds

AVT_presentation_code-screening

code to run and analyze participants screening for the AVT 7T fMRI study

analysis_high-res_pilot001_ses-002_retinotopy

sub_3

git_github_workshop

raw content of a git / github workshop: attendees can send pull request to improve the content

olfactory_fmri_blind

code base for the analysis of olfaction fMRI experiment in blind and sighted control

Jupyter Notebook

python_docker_app_demo

presentation_retinotoppy

simple "script" to run polar angle mapping retinotopy experiment with presentation

dicom_2_BIDS

a set of scripts and function to convert DICOM data into a brain imaging data structure using matlab and SPM12

template_fMRI_analysis

tactileMotion_fMRI_analysis

cff_example_software

clean_code_style

cobidas_reexecute