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ReactionMiner
Tool to predict (bio)chemical reactions using graph mining.iCOMIC
nbfpeg
PIVOT
minMicrobiome
Code for generation of Minimal Microbiomes using a constraint-based approachMinReact
CAMP
fbc_curation_matlab
fbc_curation contains MATLAB/COBRA helpers for reproducibility of fbc models.SysBioBook-codes
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Ramanco-FSEOF
minRerouting
Package to understand the compensatory mechanisms performing similar metabolic functions through analysis of Synthetic Lethalsramanlab.github.io
ramanlab.github.ioNonLinearAdaptation
This repository contains the necessary MATLAB and SIMULINK files for the simulation studies done in the manuscript titled, 'Design Principles for Global, Perfect Adaptation]{Design Principles for Perfect Adaptation in Biological Networks with Nonlinear Dynamics'picCASO
picCASO is a MATLAB package to simulate the dynamics of spatial patterning of a microbial consortium on a 2-dimensional surface.FastSL-py
Python implementation of FastSLComPass
A tool to predict sub-networks from metabolic networkscTaG
DiseaseModuleIdentification
NBDriver
Codes required to reproduce the results from the NBDriver manuscriptcomm-synleth-virgo
Repository for running FastSL on the community models of Human gut microbes on the Virgo cluster at IIT Madras.Love Open Source and this site? Check out how you can help us