RabadanLab/ph_datasets

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Created over 9 years ago
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RabadanLab/ph_datasets

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Persistent Homology Datasets

arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

randomly

A Library for Denoising Single-Cell Data with Random Matrix Theory

Jupyter Notebook

Pegasus

Annotation and Prediction of Oncogenic Gene Fusions in RNAseq

TOBI

TOBI predicts somatic variants from .vcf or .bam input

Bootstrap-Analysis-Arriaga-Nature-Cancer-2020

Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)

mage-pipeline

MAGE - Multilevel Analysis of Gene Expression

pamler

MITKats

The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.

Chek2_scRNAseq

The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.

Jupyter Notebook

melamed_comorbidity

Code for "Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes". View more information in the ipython notebook