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arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seqrandomly
A Library for Denoising Single-Cell Data with Random Matrix TheoryPegasus
Annotation and Prediction of Oncogenic Gene Fusions in RNAseqTOBI
TOBI predicts somatic variants from .vcf or .bam inputph_datasets
Persistent Homology DatasetsBootstrap-Analysis-Arriaga-Nature-Cancer-2020
Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)mage-pipeline
MAGE - Multilevel Analysis of Gene Expressionpamler
MITKats
The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.Chek2_scRNAseq
The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.Love Open Source and this site? Check out how you can help us