There are no reviews yet. Be the first to send feedback to the community and the maintainers!
AmpliGone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experimentSARS2seq
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.TrueConsense
TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same timeauriclass
Quick estimation of Candida auris clade using mashjuno-typing
Pipeline to perform bacterial typing (7-locus MLST and serotyping when appropriate). It works with several (but not all) species/genera.ViroConstrictor
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genomejuno-assembly
Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statisticsHERA-Bioinformatics-Training
clcbioformatter
Re-formatting Fasta headers to fit CLC bio. Requested by the AMR group.juno-mapping
Reference-based mapping Juno pipelineMyco_lofreq
Pipeline to call minority variants in Mycobacterium samplesjuno-blast
Automated BLASTing from fasta files.containers
Creating and uploading containers to ghcrjuno-amr
-AminoExtract
AminoExtract is a tool for translating and extracting amino acid sequences from nucleotide-sequences based on a GFF inputjuno-cgmlst
Pipeline to perform cgMLST (or wgMLST) analysis. At the moment it just handles few genera for cgMLSTLove Open Source and this site? Check out how you can help us