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Tools and methods for analysis of single cell assay data in RopenCyto
A package that provides data analysis pipeline for flow cytometry.ggcyto
Visualize Cytometry data with ggplot2flowWorkspace
flowWorkspaceflowCore
Core flow cytometry infrastructureCytoML
A GatingML Interface for Cross Platform Cytometry Data SharingRtsne.multicore
R wrapper for Multicore t-SNEFAUST
Full annotation using shape-constrained treesImmuneSpaceR
An R Interface to the ImmuneSpace database portalflowStats
flowStats: algorithms for flow cytometry data analysis using BioConductor toolscovid19_sc
Processing workflow for COVID-19 single cell datacytoverse
collections of tools for cytometry data analysiscytolib
c++ library for representing and interacting the gated cytometry data structurescamp
Implementation of Selective Clustering Annotated using Modes of ProjectionsflowViz
Visualization for flow cytometryflowClust
Bayesian flowClustBNCResponse
response to the BNC paperRNASeqPipelineR
Streamline the processing of RNASeq dataMIMOSA
Mixture Models for Single Cell AssayspepStat
Peptide microarray statistical analysisshinyCyto
A shiny interface to openCytoCOMPASS
Combinatorial Polyfunctionality Analysis of Single CellsshinyGate
A Shiny application for interactive gating, powered by openCyto.QUALIFIER
Qualitiy control for gated flow cytometry datacytoqc
A Quality Control tool for cytometryLabKeyModules
LabKey Modules for ImmuneSpaceHIV.db
HIV annotation databaseluminex_R
cytoinstaller
cyto package Installation from repositories, Including 'bioconductor' and 'GitHub' releaseLumiR
The LumiR packageRProtoBufLib
bundled Protocol buffers library as an R packagecytoUtils
Helper tools for cytometryFHSingleCellWorkshops
Fred Hutch Single Cell RNASeq Analysis - Hands on workshop 3flowReMix
A mixture of mixed generalized linear models for analyzing flow cytometry cell-count data.cytoEx
An unsupervised hierarchical gatingopencytoCL
OpenCyto Command Line ToolsUITesting
ImmuneSpace UI TestingflowQ
Quality control for flow cytometryncdfFlow
A package that provides ncdf based storage for flow cytometry data.Pviz
cytoCL
Command line tools for cytolibImmPortR
R wrapper around the ImmPort API and its download toolpaper-opencyto
corpusFreq
Tools for text standardization in situations with specialized vocabularycytoverse.org
ImmuneSignatures
HIPC ImmuneSignaturesfaust_simulation_study
cytoCore
The R frontend to cytolib c++ librarymbenchmark
benchmarking the common matrix operationsShinyApp_flowWorkspace
ImmuneSpaceFrontendTools
HIPCCyto
HIPC CytometryflowIncubator
Routines that don't belong to the core flow packages yet.MIMOSA_shiny
A prototype shiny interface to MIMOSAImmuneSignatures2
HIPC ImmuneSignatures2cytopy
flowcap3
bioconductor_docker_cytoverse
Bioconductor docker image with bundled RGLab cytometry packagesHIPCMatrix
Utilities for processing and analyzing HIPC gene expression data in ImmuneSpaceOpenCytoVisualization
Interface within LabKey for visualizing FCS Files with the ability to display gated data from a FlowJo Workspace.Love Open Source and this site? Check out how you can help us