RGLab/corpusFreq

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Created over 6 years ago
Updated about 3 years ago

RGLab/corpusFreq

RGLab

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Tools for text standardization in situations with specialized vocabulary

MAST

Tools and methods for analysis of single cell assay data in R

openCyto

A package that provides data analysis pipeline for flow cytometry.

ggcyto

Visualize Cytometry data with ggplot2

flowWorkspace

flowCore

Core flow cytometry infrastructure

CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

Rtsne.multicore

R wrapper for Multicore t-SNE

FAUST

Full annotation using shape-constrained trees

ImmuneSpaceR

An R Interface to the ImmuneSpace database portal

flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools

covid19_sc

Processing workflow for COVID-19 single cell data

cytoverse

collections of tools for cytometry data analysis

cytolib

c++ library for representing and interacting the gated cytometry data structure

scamp

Implementation of Selective Clustering Annotated using Modes of Projections

flowViz

Visualization for flow cytometry

flowClust

Bayesian flowClust

BNCResponse

response to the BNC paper

RNASeqPipelineR

Streamline the processing of RNASeq data

MIMOSA

Mixture Models for Single Cell Assays

pepStat

Peptide microarray statistical analysis

shinyCyto

A shiny interface to openCyto

COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

shinyGate

A Shiny application for interactive gating, powered by openCyto.

QUALIFIER

Qualitiy control for gated flow cytometry data

cytoqc

A Quality Control tool for cytometry

LabKeyModules

LabKey Modules for ImmuneSpace

HIV.db

HIV annotation database

luminex_R

cytoinstaller

cyto package Installation from repositories, Including 'bioconductor' and 'GitHub' release

LumiR

The LumiR package

shinyCytokine

A Shiny app for visualizing single-cell cytokine proportions.

RProtoBufLib

bundled Protocol buffers library as an R package

cytoUtils

Helper tools for cytometry

FHSingleCellWorkshops

Fred Hutch Single Cell RNASeq Analysis - Hands on workshop 3

flowReMix

A mixture of mixed generalized linear models for analyzing flow cytometry cell-count data.

cytoEx

An unsupervised hierarchical gating

opencytoCL

OpenCyto Command Line Tools

UITesting

ImmuneSpace UI Testing

flowQ

Quality control for flow cytometry

ncdfFlow

A package that provides ncdf based storage for flow cytometry data.

Pviz

cytoCL

Command line tools for cytolib

ImmPortR

R wrapper around the ImmPort API and its download tool

paper-opencyto

cytoverse.org

ImmuneSignatures

HIPC ImmuneSignatures

faust_simulation_study

cytoCore

The R frontend to cytolib c++ library

mbenchmark

benchmarking the common matrix operations

ShinyApp_flowWorkspace

ImmuneSpaceFrontendTools

HIPCCyto

flowIncubator

Routines that don't belong to the core flow packages yet.

MIMOSA_shiny

A prototype shiny interface to MIMOSA

ImmuneSignatures2

HIPC ImmuneSignatures2

cytopy

flowcap3

bioconductor_docker_cytoverse

Bioconductor docker image with bundled RGLab cytometry packages

HIPCMatrix

Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace

OpenCytoVisualization

Interface within LabKey for visualizing FCS Files with the ability to display gated data from a FlowJo Workspace.