Discover RGLab/OpenCytoVisualization Open Source project by @RGLab

This repository has been archived on 27/Apr/2021
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Interface within LabKey for visualizing FCS Files with the ability to display gated data from a FlowJo Workspace.

MAST

Tools and methods for analysis of single cell assay data in R

222

openCyto

A package that provides data analysis pipeline for flow cytometry.

ggcyto

Visualize Cytometry data with ggplot2

HTML

flowWorkspace

flowCore

Core flow cytometry infrastructure

Rtsne.multicore

R wrapper for Multicore t-SNE

C++

CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

HTML

FAUST

Full annotation using shape-constrained trees

C++

ImmuneSpaceR

An R Interface to the ImmuneSpace database portal

covid19_sc

Processing workflow for COVID-19 single cell data

flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools

cytoverse

collections of tools for cytometry data analysis

cytolib

c++ library for representing and interacting the gated cytometry data structure

C++

scamp

Implementation of Selective Clustering Annotated using Modes of Projections

C++

flowViz

Visualization for flow cytometry

flowClust

Bayesian flowClust

BNCResponse

response to the BNC paper

HTML

RNASeqPipelineR

Streamline the processing of RNASeq data

MIMOSA

Mixture Models for Single Cell Assays

pepStat

Peptide microarray statistical analysis

shinyCyto

A shiny interface to openCyto

shinyGate

A Shiny application for interactive gating, powered by openCyto.

QUALIFIER

Qualitiy control for gated flow cytometry data

COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells

cytoqc

A Quality Control tool for cytometry

LabKeyModules

LabKey Modules for ImmuneSpace

JavaScript

RProtoBufLib

bundled Protocol buffers library as an R package

HIV.db

HIV annotation database

luminex_R

cytoinstaller

cyto package Installation from repositories, Including 'bioconductor' and 'GitHub' release

LumiR

The LumiR package

shinyCytokine

A Shiny app for visualizing single-cell cytokine proportions.

cytoCL

Command line tools for cytolib

C++

cytoUtils

Helper tools for cytometry

C++

FHSingleCellWorkshops

Fred Hutch Single Cell RNASeq Analysis - Hands on workshop 3

HTML

flowReMix

A mixture of mixed generalized linear models for analyzing flow cytometry cell-count data.

HTML

cytoEx

An unsupervised hierarchical gating

opencytoCL

OpenCyto Command Line Tools

UITesting

ImmuneSpace UI Testing

flowQ

Quality control for flow cytometry

ncdfFlow

A package that provides ncdf based storage for flow cytometry data.

Pviz

ImmPortR

R wrapper around the ImmPort API and its download tool

paper-opencyto

corpusFreq

Tools for text standardization in situations with specialized vocabulary

ImmuneSignatures

HIPC ImmuneSignatures

HTML

cytoverse.org

HTML

faust_simulation_study

cytoCore

The R frontend to cytolib c++ library

mbenchmark

benchmarking the common matrix operations

ImmuneSpaceFrontendTools

TypeScript

flowIncubator

Routines that don't belong to the core flow packages yet.

MIMOSA_shiny

A prototype shiny interface to MIMOSA

ImmuneSignatures2

HIPC ImmuneSignatures2

cytopy

Python

flowcap3

bioconductor_docker_cytoverse

Bioconductor docker image with bundled RGLab cytometry packages

Dockerfile

HIPCCyto

HIPC Cytometry

HIPCMatrix

Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace

ShinyApp_flowWorkspace

RGLab/OpenCytoVisualization

RGLab

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