RGLab/LabKeyModules RGLab/LabKeyModules

  • Stars
    star
    5
  • Rank 2,861,937 (Top 57 %)
  • Language
    JavaScript
  • License
    Artistic License 2.0
  • Created about 11 years ago
  • Updated almost 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
RGLab/LabKeyModules
github

RGLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

LabKey Modules for ImmuneSpace

More Repositories

1

MAST

Tools and methods for analysis of single cell assay data in R
R
222
star
2

openCyto

A package that provides data analysis pipeline for flow cytometry.
R
74
star
3

ggcyto

Visualize Cytometry data with ggplot2
HTML
54
star
4

flowWorkspace

flowWorkspace
R
44
star
5

flowCore

Core flow cytometry infrastructure
R
43
star
6

Rtsne.multicore

R wrapper for Multicore t-SNE
C++
28
star
7

CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing
HTML
28
star
8

FAUST

Full annotation using shape-constrained trees
C++
26
star
9

ImmuneSpaceR

An R Interface to the ImmuneSpace database portal
R
24
star
10

covid19_sc

Processing workflow for COVID-19 single cell data
R
16
star
11

flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools
R
15
star
12

cytoverse

collections of tools for cytometry data analysis
R
12
star
13

cytolib

c++ library for representing and interacting the gated cytometry data structure
C++
12
star
14

scamp

Implementation of Selective Clustering Annotated using Modes of Projections
C++
10
star
15

flowViz

Visualization for flow cytometry
R
9
star
16

flowClust

Bayesian flowClust
R
9
star
17

BNCResponse

response to the BNC paper
HTML
8
star
18

RNASeqPipelineR

Streamline the processing of RNASeq data
R
7
star
19

MIMOSA

Mixture Models for Single Cell Assays
R
7
star
20

pepStat

Peptide microarray statistical analysis
R
7
star
21

shinyCyto

A shiny interface to openCyto
R
7
star
22

shinyGate

A Shiny application for interactive gating, powered by openCyto.
R
6
star
23

QUALIFIER

Qualitiy control for gated flow cytometry data
R
6
star
24

COMPASS

Combinatorial Polyfunctionality Analysis of Single Cells
R
6
star
25

cytoqc

A Quality Control tool for cytometry
R
5
star
26

RProtoBufLib

bundled Protocol buffers library as an R package
R
3
star
27

HIV.db

HIV annotation database
R
3
star
28

luminex_R

R
3
star
29

cytoinstaller

cyto package Installation from repositories, Including 'bioconductor' and 'GitHub' release
R
3
star
30

LumiR

The LumiR package
R
3
star
31

shinyCytokine

A Shiny app for visualizing single-cell cytokine proportions.
R
3
star
32

cytoCL

Command line tools for cytolib
C++
2
star
33

cytoUtils

Helper tools for cytometry
C++
2
star
34

FHSingleCellWorkshops

Fred Hutch Single Cell RNASeq Analysis - Hands on workshop 3
HTML
2
star
35

flowReMix

A mixture of mixed generalized linear models for analyzing flow cytometry cell-count data.
HTML
2
star
36

cytoEx

An unsupervised hierarchical gating
R
2
star
37

opencytoCL

OpenCyto Command Line Tools
R
2
star
38

UITesting

ImmuneSpace UI Testing
R
2
star
39

flowQ

Quality control for flow cytometry
R
2
star
40

ncdfFlow

A package that provides ncdf based storage for flow cytometry data.
R
2
star
41

Pviz

R
2
star
42

ImmPortR

R wrapper around the ImmPort API and its download tool
R
1
star
43

paper-opencyto

R
1
star
44

corpusFreq

Tools for text standardization in situations with specialized vocabulary
R
1
star
45

ImmuneSignatures

HIPC ImmuneSignatures
HTML
1
star
46

cytoverse.org

HTML
1
star
47

faust_simulation_study

R
1
star
48

cytoCore

The R frontend to cytolib c++ library
R
1
star
49

mbenchmark

benchmarking the common matrix operations
R
1
star
50

ImmuneSpaceFrontendTools

TypeScript
1
star
51

flowIncubator

Routines that don't belong to the core flow packages yet.
R
1
star
52

MIMOSA_shiny

A prototype shiny interface to MIMOSA
R
1
star
53

ImmuneSignatures2

HIPC ImmuneSignatures2
R
1
star
54

cytopy

Python
1
star
55

flowcap3

R
1
star
56

bioconductor_docker_cytoverse

Bioconductor docker image with bundled RGLab cytometry packages
Dockerfile
1
star
57

HIPCCyto

HIPC Cytometry
R
1
star
58

HIPCMatrix

Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace
R
1
star
59

OpenCytoVisualization

Interface within LabKey for visualizing FCS Files with the ability to display gated data from a FlowJo Workspace.
JavaScript
1
star
60

ShinyApp_flowWorkspace

R
1
star