• Stars
    star
    178
  • Rank 213,720 (Top 5 %)
  • Language
    Python
  • License
    Apache License 2.0
  • Created over 2 years ago
  • Updated 16 days ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

MONAI Model Zoo that hosts models in the MONAI Bundle format.

MONAI Model Zoo

MONAI Model Zoo hosts a collection of medical imaging models in the MONAI Bundle format. All source code of models (bundles) are tracked in models/, and for each distinct version of a bundle, it will be archived as a .zip file (named in the form of bundle_name_version.zip) and stored in Releases.

Getting Started

To browse the available models, please see https://monai.io/model-zoo.

A basic example to download and extract a bundle is:

pip install "monai[fire]"
python -m monai.bundle download "wholeBody_ct_segmentation" --bundle_dir "bundles/"
  • The commands will download wholeBody_ct_segmentation to the current directory's bundles/ subdirectory.
  • For more downloading options, please run python -m monai.bundle download -h
  • For the specific usage of a bundle, please refer to its docs folder, for example, bundles/wholeBody_ct_segmentation/docs.

To get started with the models, please see the example use cases.

License

Bundles released on the MONAI Model Zoo require a license for the software itself comprising the configuration files and model weights. You are required to adhere to the license conditions included with each bundle, as well as any license conditions stated for data bundles may include or use (please check the file docs/data_license.txt if it is existing within the bundle directory).

The MONAI Model Zoo repository itself follows Apache License, thus you need to follow this license if using its software, and we recommend this license for bundles.

The MONAI Model Zoo does not make any statement of the suitability of any model for a particular task, especially not for therapeutic or diagnostic use.

Contributing

To make a contribution in MONAI Model Zoo, see the contributing guidelines.

Links

More Repositories

1

MONAI

AI Toolkit for Healthcare Imaging
Python
5,655
star
2

tutorials

MONAI Tutorials
Jupyter Notebook
1,717
star
3

research-contributions

Implementations of recent research prototypes/demonstrations using MONAI.
Python
976
star
4

MONAILabel

MONAI Label is an intelligent open source image labeling and learning tool.
Python
586
star
5

GenerativeModels

MONAI Generative Models makes it easy to train, evaluate, and deploy generative models and related applications
Jupyter Notebook
581
star
6

MONAIBootcamp2021

Materials for the 2021 MONAI Bootcamp
Jupyter Notebook
106
star
7

monai-deploy

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.
Shell
98
star
8

VISTA

MONAI Versatile Imaging Segmentation and Annotation
Python
95
star
9

monai-deploy-app-sdk

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.
Jupyter Notebook
88
star
10

MetricsReloaded

Python
67
star
11

MONAIBootcamp2020

Material for the 2020 MONAI Bootcamp
Jupyter Notebook
66
star
12

monai-bootcamp

Jupyter Notebook
61
star
13

monai-deploy-informatics-gateway

MONAI Deploy Informatics Gateway facilitates integration with DICOM compliant systems, enables ingestion of imaging data, helps triggering of workflows with the MONAI Deploy Workflow Manager and offers pushing the output to PACS systems.
C#
26
star
14

SlicerMONAIViz

MONAIViz - 3D Slicer Extension
Python
21
star
15

MONAIStream

The codebase is currently NOT under active development.
Python
18
star
16

monai-deploy-workflow-manager

Repository containing the Workflow Manager sub-system part of MONAI Deploy.
C#
13
star
17

monai-deploy-app-server

Application server that will run MAPs (MONAI Application Package)
Python
9
star
18

monai-deploy-storage

Storage layer for MONAI Deploy clinical data pipelines system
C#
5
star
19

project-monai.github.io

project monai website https://monai.io/
HTML
5
star
20

MONAI-extra-test-data

Repository containing extra test data for MONAI
Python
4
star
21

monai-tutorial-miccai-2023

MONAI tutorial website for MICCAI 2023
HTML
3
star
22

monai-code-formatter

A github action for automatically formatting source code files for MONAI
HTML
2
star
23

monai-deploy-messaging

MONAI Deploy communication system between clinical data pipelines components
C#
2
star
24

GliMR_workshop

Notebooks for the MONAI session of GliMR workshop. Brain tumour classification and segmentation
Jupyter Notebook
2
star
25

monai-tutorial-miccai-2022

HTML
2
star
26

.github

for the Project-MONAI org level configurations on GitHub
1
star