PombertLab/Old

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Perl
License
MIT License
Created almost 11 years ago
Updated almost 4 years ago

PombertLab/Old

PombertLab

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Contains old miscellaneous scripts for genomics. No longer maintained.

SYNY

The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.

3DFI

The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

SSRG

The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.

A2GB

A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.

Publication_scripts

This repository contains scripts from published or submitted manuscripts.

ID16S

This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.

QueGO

The QueGO pipeline identifies potential homologs to proteins related to specific functionality.

A2A

The A2A pipeline guides users from genome assembly to annotations.