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3DFI
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.SSRG
The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.A2GB
A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBIβs GenBank.Publication_scripts
This repository contains scripts from published or submitted manuscripts.Old
Contains old miscellaneous scripts for genomics. No longer maintained.SYNY
The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.ID16S
This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.QueGO
The QueGO pipeline identifies potential homologs to proteins related to specific functionality.Love Open Source and this site? Check out how you can help us