PoisotLab/SpatialProbabilisticMetaweb

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Julia
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MIT License
Created about 3 years ago
Updated 4 months ago

PoisotLab/SpatialProbabilisticMetaweb

PoisotLab

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Downscaling metawebs and playing with uncertainty in space. Published in Philosophical Transactions of the Royal Society B at https://doi.org/10.1098/rstb.2023.0166

EcologicalNetworks.jl

Everything you've never dreamed about measuring on ecological networks.

manuscript-template

BioEnergeticFoodWebs.jl

A unified interface for simulations of the Bio-Energetic model on food webs

PLMT

Poisot Lab Manuscript Template

GBIF.jl

Functions and types to access GBIF data from Julia

SimpleSDMLayers.jl

Simple layers for species distribution modeling and bioclimatic data

betalink

MIRROR - beta diversity of species interaction networks

SpeciesDistributionToolkit.jl

Work with species distributions in Julia

Mangal.jl

Get data*. Make science*. (*: only if it's about ecological networks tho)

LabPolicies

Be excellent to each other.

MetawebTransferLearning

SpeciesInteractionNetworks.jl

Work on species interaction networks in Julia

lpbrim

LP & BRIM bipartite modularity detection in R

NCBITaxonomy.jl

Wrapper around the NCBI taxonomy files

website

Hugo sources for the lab's website

EcologicalNetworksPlots.jl

Networks. Boil 'em mash 'em stick 'em in a stew. And now, plot 'em.

Brim.jl

BRIM -- use EcologicalNetwork.jl instead

rInteract

Access data on ecological interactions from R

PLPT

Presentation template

EssentialBiodiversityVariables.jl

Access to GEO BON's REST API for the EBVs

paco

Procrustes analysis of cophylogenies

SpatialBoundaries.jl

https://poisotlab.github.io/SpatialBoundaries.jl/

PLCG

PoisotLab contributing guidelines

Fauxcurrences.jl

Generates null models for species occurrence data

BiodiversityObservationNetworks.jl

Methods for optimizing the spatial location of biodiversity-observation-networks

EcoNetworksLabs

Computer labs and notebooks for the upcoming book "Practical Analysis of Ecological Networks"

Jupyter Notebook

2015_ms_scisoftware

ms_betacov_mapping

ms_svd_imputation

Imputation of missing interactions using SVD

MS_network_els

ms_networks_boundaries

Where do networks stop?

MangalSamplingStatus

Automated reporting of the coverage of the mangal.io database of species interactions

worldwide-links-prediction

Figures created for the first meeting of the Canadian metaweb working group

ms_network_prediction

Making better network predictions through ML - done right!