Planteome/plant-ontology

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Created almost 9 years ago
Updated 8 months ago

Planteome/plant-ontology

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Repository for the Plant Ontology

plant-trait-ontology

Explore the Plant Trait Ontology on the Planteome site.

plant-stress-ontology

An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress

Jupyter Notebook

plant-experimental-conditions-ontology

Repository for the Plant Experimental Conditions Ontology

samara

extracts plant trait data from open data sources like apsnet and ars-grin

CO_321-wheat-traits

plant-disease-ontology

Repository for the Plant Disease Ontology

CO_322-maize-traits

CO_331-sweetpotato-traits

Sweetpotato Trait Ontology maintained by Crop Ontology and SweetpotatoBase

soybase-ontology

planteome-data-visualization

Repository for the Data and Visualization working group

CO_320-rice-traits

planteome-image-annotator

Port AISO into iPlant BisQue and develop machine-learning technologies for plant image auto-segmentation and annotation.

planteome-deep-segmenter-original

CO_330-potato-traits

Potato trait ontology

planteome-annotation-data

This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.

planteome-ncbi-taxonomy

planteome-deep-segmenter-cyverse-dockerized

plant-phenoscape-data

Data files for the Plant Phenoscape Knowledgebase

common-files-for-ref-ontologies

This is a place to keep the files which are used for the various reference ontologies.

planteome-core

Repository (and tracker) for a planteome.owl importer for the whole project

CO_343-yam-traits

Yam trait ontology

CO_334-cassava-traits

Cassava Trait Ontology maintained by Crop Ontology and Cassavabase

planteome-mapping-utils

CO_371-blueberry-traits

Blueberry trait Ontology