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gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suitebionix
Functional highly reproducible bioinformatics pipelinesStructuralVariantAnnotation
R package designed to simplify structural variant analysisbioshake
Bioinformatics pipelines with Haskell and Shakesv_benchmark
Comprehensive benchmark of structural variant callersPathOS
PathOS is a clinical application for filtering, analysing and reporting on NGS variantssocrates
HaveYouSwappedYourSamples
This project contains simple methods to measure sample relatedness and identify potential swaps and contaminationCanary
A fast and self-contained amplicon pipeline tool.clove
classification of higher-order structural variants from breakpoint dataCNspector
Web-based copy number browser.sv_tools
A few tools for plotting and reasoning about genomic structural variants.svaNUMT
assemble_var
A pipeline for the assembly of VAR genes from transcriptome dataVIRUSBreakend
Viral Integration Recognition Using Single Breakendsnix-workshop
RothSchulze_pregnancy-gut-microbiome-T1D
Data, metadata and analyses performed in microbiome whole metagenomics sequencing data of women with and without T1D during pregnancy.svqsc
Structural Variation Quality Score CalculatorMungo
Python library for munging biological sequence and annotation dataIntroductionToGenomicsWorkshop
WEHI Masterclass Day 3: Genomicsdedumi
wgd.test
By modelling aneuploidy with interleaving branching processes we can make a decision about whether or not genome doubling occurred. We can also label each event as being pre or post GD.MHC-clogs
MHC Class I Gene Search toolLove Open Source and this site? Check out how you can help us