PapenfussLab/bioshake

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56
Rank 515,343 (Top 11 %)
Language
Haskell
License
ISC License
Created over 7 years ago
Updated almost 5 years ago

PapenfussLab/bioshake

PapenfussLab

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Bioinformatics pipelines with Haskell and Shake

gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

bionix

Functional highly reproducible bioinformatics pipelines

StructuralVariantAnnotation

R package designed to simplify structural variant analysis

sv_benchmark

Comprehensive benchmark of structural variant callers

PathOS

PathOS is a clinical application for filtering, analysing and reporting on NGS variants

socrates

HaveYouSwappedYourSamples

This project contains simple methods to measure sample relatedness and identify potential swaps and contamination

Canary

A fast and self-contained amplicon pipeline tool.

clove

classification of higher-order structural variants from breakpoint data

CNspector

Web-based copy number browser.

sv_tools

A few tools for plotting and reasoning about genomic structural variants.

svaNUMT

VIRUSBreakend

Viral Integration Recognition Using Single Breakends

nix-workshop

RothSchulze_pregnancy-gut-microbiome-T1D

Data, metadata and analyses performed in microbiome whole metagenomics sequencing data of women with and without T1D during pregnancy.

svqsc

Structural Variation Quality Score Calculator

svaRetro

assemble_var

A pipeline for the assembly of VAR genes from transcriptome data

Mungo

Python library for munging biological sequence and annotation data

IntroductionToGenomicsWorkshop

WEHI Masterclass Day 3: Genomics

wgd.test

By modelling aneuploidy with interleaving branching processes we can make a decision about whether or not genome doubling occurred. We can also label each event as being pre or post GD.

MHC-clogs

MHC Class I Gene Search tool