PapenfussLab/bionix PapenfussLab/bionix

  • Stars
    star
    75
  • Rank 424,578 (Top 9 %)
  • Language
    Nix
  • License
    BSD 3-Clause "New...
  • Created about 6 years ago
  • Updated 6 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
PapenfussLab/bionix
github

PapenfussLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Functional highly reproducible bioinformatics pipelines

More Repositories

1

gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite
Java
249
star
2

StructuralVariantAnnotation

R package designed to simplify structural variant analysis
R
66
star
3

bioshake

Bioinformatics pipelines with Haskell and Shake
Haskell
55
star
4

sv_benchmark

Comprehensive benchmark of structural variant callers
R
41
star
5

PathOS

PathOS is a clinical application for filtering, analysing and reporting on NGS variants
Java
28
star
6

socrates

Java
16
star
7

HaveYouSwappedYourSamples

This project contains simple methods to measure sample relatedness and identify potential swaps and contamination
Python
10
star
8

Canary

A fast and self-contained amplicon pipeline tool.
Groovy
7
star
9

clove

classification of higher-order structural variants from breakpoint data
Java
7
star
10

CNspector

Web-based copy number browser.
R
4
star
11

sv_tools

A few tools for plotting and reasoning about genomic structural variants.
Python
3
star
12

svaNUMT

R
3
star
13

assemble_var

A pipeline for the assembly of VAR genes from transcriptome data
HTML
2
star
14

VIRUSBreakend

Viral Integration Recognition Using Single Breakends
2
star
15

nix-workshop

Nix
2
star
16

RothSchulze_pregnancy-gut-microbiome-T1D

Data, metadata and analyses performed in microbiome whole metagenomics sequencing data of women with and without T1D during pregnancy.
HTML
2
star
17

svqsc

Structural Variation Quality Score Calculator
R
1
star
18

svaRetro

R
1
star
19

Mungo

Python library for munging biological sequence and annotation data
Python
1
star
20

IntroductionToGenomicsWorkshop

WEHI Masterclass Day 3: Genomics
Dockerfile
1
star
21

dedumi

Haskell
1
star
22

wgd.test

By modelling aneuploidy with interleaving branching processes we can make a decision about whether or not genome doubling occurred. We can also label each event as being pre or post GD.
R
1
star
23

MHC-clogs

MHC Class I Gene Search tool
Python
1
star