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SnpArrays.jl
Compressed storage for SNP dataMendelImpute.jl
OpenMendel package for haplotyping and imputationMendelIHT.jl
Iterative hard thresholding for l0 penalized regressionOrdinalGWAS.jl
Genome-wide association studies (GWAS) for ordered categorical phenotypesVCFTools.jl
Julia utilities for handling VCF filesTrajGWAS.jl
OpenMendel.github.io
The main website for the OpenMendel project.OrdinalMultinomialModels.jl
ordered multinomial modelsMendelPlots.jl
Julia package for plotting results from GWASTutorials
Basic OpenMendel tutorialsBGEN.jl
VarianceComponentModels.jl
Utilities for fitting and testing variance component modelsWiSER.jl
Within-subject variance estimation by robust regression (WiSER)ASHG-OpenMendelWorkshop-2020-Oct
OpenMendel tutorials for ASHG WorkshopADMIXTURE.jl
Julia wrapper of the ADMIXTURE program for estimating ancestryMendelBase.jl
MendelBase contains the base functions of OpenMendel.LangeSymposium-ProgrammingWorkshop-20202022
OpenMendel tutorials for Lange's Symposium Programming WorkshopMendelGWAS.jl
This package performs standard Genome-wide Association Studies.TraitSimulation.jl
Simulate phenotypes from any GLM modelGeneticCounseling_ASHG2019
Tutorials and data sets for ASHG 2019 workshop on Genetic Counseling.PGENFiles.jl
CodingStyle
Coding style guidelines for OpenMendel packagesGeneticVariantBase.jl
MendelTwoPointLinkage.jl
This analysis option performs two-point linkage analysis.MendelLocationScores.jl
This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.HaploADMIXTURE.jl
MendelSearch.jl
MendelSearch is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.ClassicMendel
Official Mendel package distributionMendelGeneticCounseling.jl
This analysis option performs risk calculations for genetic counseling problems.MendelKinship.jl
This analysis option computes kinship and other identity coefficients.MendelGameteCompetition.jl
This analysis option implements a gamete competition analysis, which is a generalization of the TDT analysis.MendelGeneDropping.jl
This package performs gene dropping with several useful options for the output.MendelEstimateFrequencies.jl
This analysis option calculates a likelihood-based estimate of allele frequencies.QuasiCopula.jl
A Flexible Quasi-Copula Distribution for Statistical ModelingMendelAimSelection.jl
This analysis option selects the SNPs that are most informative at predicting ancestry for your data β the best Ancestry Informative Markers (AIMs).Love Open Source and this site? Check out how you can help us