OpenMendel/MendelKinship.jl OpenMendel/MendelKinship.jl

  • Stars
    star
    1
  • Language
    Julia
  • License
    MIT License
  • Created over 8 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
OpenMendel/MendelKinship.jl
github

OpenMendel

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

This analysis option computes kinship and other identity coefficients.

More Repositories

1

SnpArrays.jl

Compressed storage for SNP data
Julia
44
star
2

MendelImpute.jl

OpenMendel package for haplotyping and imputation
Julia
24
star
3

MendelIHT.jl

Iterative hard thresholding for l0 penalized regression
Julia
22
star
4

OrdinalGWAS.jl

Genome-wide association studies (GWAS) for ordered categorical phenotypes
Julia
20
star
5

VCFTools.jl

Julia utilities for handling VCF files
Julia
18
star
6

TrajGWAS.jl

Julia
13
star
7

OpenMendel.github.io

The main website for the OpenMendel project.
12
star
8

OrdinalMultinomialModels.jl

ordered multinomial models
Julia
11
star
9

MendelPlots.jl

Julia package for plotting results from GWAS
Julia
10
star
10

Tutorials

Basic OpenMendel tutorials
HTML
10
star
11

BGEN.jl

Julia
10
star
12

VarianceComponentModels.jl

Utilities for fitting and testing variance component models
Julia
9
star
13

WiSER.jl

Within-subject variance estimation by robust regression (WiSER)
Julia
8
star
14

ASHG-OpenMendelWorkshop-2020-Oct

OpenMendel tutorials for ASHG Workshop
HTML
7
star
15

OpenADMIXTURE.jl

Julia
7
star
16

ADMIXTURE.jl

Julia wrapper of the ADMIXTURE program for estimating ancestry
Julia
6
star
17

MendelBase.jl

MendelBase contains the base functions of OpenMendel.
Julia
5
star
18

LangeSymposium-ProgrammingWorkshop-20202022

OpenMendel tutorials for Lange's Symposium Programming Workshop
HTML
5
star
19

MendelGWAS.jl

This package performs standard Genome-wide Association Studies.
Julia
5
star
20

TraitSimulation.jl

Simulate phenotypes from any GLM model
Julia
3
star
21

GeneticCounseling_ASHG2019

Tutorials and data sets for ASHG 2019 workshop on Genetic Counseling.
Jupyter Notebook
3
star
22

PGENFiles.jl

Julia
3
star
23

CodingStyle

Coding style guidelines for OpenMendel packages
3
star
24

GeneticVariantBase.jl

Julia
2
star
25

MendelTwoPointLinkage.jl

This analysis option performs two-point linkage analysis.
Julia
2
star
26

MendelLocationScores.jl

This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.
Julia
2
star
27

HaploADMIXTURE.jl

Julia
2
star
28

MendelSearch.jl

MendelSearch is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.
Julia
2
star
29

ClassicMendel

Official Mendel package distribution
2
star
30

MendelGeneticCounseling.jl

This analysis option performs risk calculations for genetic counseling problems.
Julia
2
star
31

MendelGameteCompetition.jl

This analysis option implements a gamete competition analysis, which is a generalization of the TDT analysis.
Julia
1
star
32

MendelGeneDropping.jl

This package performs gene dropping with several useful options for the output.
Julia
1
star
33

MendelEstimateFrequencies.jl

This analysis option calculates a likelihood-based estimate of allele frequencies.
Julia
1
star
34

QuasiCopula.jl

A Flexible Quasi-Copula Distribution for Statistical Modeling
Julia
1
star
35

MendelAimSelection.jl

This analysis option selects the SNPs that are most informative at predicting ancestry for your data β€” the best Ancestry Informative Markers (AIMs).
Julia
1
star