NKI-AI/dicomtk

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Language
Python
License
MIT License
Created almost 4 years ago
Updated almost 4 years ago

NKI-AI/dicomtk

NKI-AI

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DICOM Toolkit (dicomtk) is a Python library that parses a variety of dicom files into an SQLite database and can export to other formats.

direct

Deep learning framework for MRI reconstruction

dlup

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

ece_loss

A PyTorch implementation of the Exclusive Cross Entropy Loss.

STAPLER

STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.

xdrt

XDRT (XDR Toolkit) is a python toolkit to work with the Elekta XDR and XVI file formats.

hissl

Histology Self-Supervised Learning

dlup-lightning-mil

dlup-lightning-mil is an installable repo to easily train deep learning classifiers/regressors on gigapixel histopathology images using DLUP datasets or extracted features from HISSL

kandinsky-calibration

Kandinsky conformal prediction for image segmentation algorithms

hyperparameter-search-template

slidescore-api

Python utilities to interface with SlideScore

slidescope

SlideScope is a web-based viewer to visualize outputs of computational pathology models

kosmos-documentation

Documentation for the use of the internal AI for Oncology cluster Kosmos