Discover NKI-AI/STAPLER Open Source project

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Python
License
Apache License 2.0
Created over 1 year ago
Updated about 1 year ago

NKI-AI

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STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.

direct

Deep learning framework for MRI reconstruction

Python

180

dlup

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

Python

ece_loss

A PyTorch implementation of the Exclusive Cross Entropy Loss.

Python

xdrt

XDRT (XDR Toolkit) is a python toolkit to work with the Elekta XDR and XVI file formats.

Python

hissl

Histology Self-Supervised Learning

Python

dlup-lightning-mil

dlup-lightning-mil is an installable repo to easily train deep learning classifiers/regressors on gigapixel histopathology images using DLUP datasets or extracted features from HISSL

Python

kandinsky-calibration

Kandinsky conformal prediction for image segmentation algorithms

Python

hyperparameter-search-template

Python

dicomtk

DICOM Toolkit (dicomtk) is a Python library that parses a variety of dicom files into an SQLite database and can export to other formats.

Python

slidescore-api

Python utilities to interface with SlideScore

Python

slidescope

SlideScope is a web-based viewer to visualize outputs of computational pathology models

kosmos-documentation

Documentation for the use of the internal AI for Oncology cluster Kosmos

Makefile

NKI-AI/STAPLER

NKI-AI

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