Top Rating
- Top Contributors
  Discover the Top Open Source contributors by country or by language
- Interviews
  Discover real stories from Open Source developers
Discover

Discover your Favorite Language
Discover the top trending repositories and projects on Github. Explore the latest trends in your preferred languages.

Crystal

Elixir

Go

Assembly

OCaml

Kotlin

Emacs Lisp

Groovy

More Languages
Awesome

Awesome repositories
Discover the most awesome repositories and projects of your favorite languages. Inspired by the Awesome-* lists trend in GitHub.

Rust

R

Swift

Zig

Dart

Lua

Java

Ruby

More Languages
By Country

Rankings by Country
Discover the community of talented open source contributors in each country.

🇬🇷 Greece

🇯🇴 Jordan

🇨🇦 Canada

🇧🇾 Belarus

🇸🇽 Sint Maarten

🇧🇲 Bermuda

Kosovo

🇳🇨 New Caledonia

All Countries Compare Countries

NCBI-Codeathons/amr-2024-team-nassar

Stars
1
Language
Jupyter Notebook
License
MIT License
Created 2 months ago
Updated about 2 months ago

NCBI-Codeathons/amr-2024-team-nassar

NCBI-Codeathons

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

This repository contains tools and resources developed by Team Nassar during the "Resistance is Futile: A Codeathon to Combat Antimicrobial Resistance" (September 2024), hosted by NCBI and NIAID.

SWIGG

A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers

Using-PubMed-MEDLINE-Metadata-to-Generate-Knowledge

Jupyter Notebook

ncbi-codeathons.github.io

NCBI Codeathons Website

mlxai-2024-team-saddler

ToxPipe: Semi-autonomous AI integration of diverse toxicological data streams

OMOPOmics

Patient 'omics data in OMOP format

mlxai-2024-team-bhushan

Jupyter Notebook

vcf-4-population-genomics-team-abdennur

Jupyter Notebook

super-minityper

mlxai-2024-team-beaumont

Jupyter Notebook

SARS2-Variation-Viewer

Variation Analysis and Visualization of SARS-CoV-2 sequences in GenBank

pubmed-codeathon-team1

Jupyter Notebook

Identifying-bulk-RNA-seq-derived-biomarkers-of-cancer-risk-within-single-cell-populations

Jupyter Notebook

automated-sc-RNA-seq-analysis-in-the-cloud

vcf-4-population-genomics-team-park

SeqMoid

Jupyter Notebook

vcf-4-population-genomics-team-hearn

mlxai-2024-team-gwadz-yang

Jupyter Notebook

mlxai-2024-team-smith

Jupyter Notebook

Clouseau

A QC suite for large VCF files

Host_Phage_Interactions

Understanding how Phages Affect Microbial Disease

bothie

Virus_Graphs

Making Representative Genome Graphs from Eukaryotic Viruses and Phages

Rich Text Format

vcf-4-population-genomics-team-agustinho

Understand-cancer-evolution-through-single-cell-expression-dynamics

Jupyter Notebook

Use-UMLS-and-Python-to-classify-website-visitor-queries-into-measurable-categories

Classify your health/medical/life sciences search terms

Jupyter Notebook

amr-2024-team-prasad-feldgarden

This repository contains tools and resources developed by Team Prasad Feldgarden during the "Resistance is Futile: A Codeathon to Combat Antimicrobial Resistance" (September 2024), hosted by NCBI and NIAID.

mlxai-2024-team-landrum-song

vcf-4-population-genomics-team-warren

Jupyter Notebook

DeNovoSV

A pipeline for calling de novo structural variants from a trio with Nanopore long read data

pubmed-codeathon-team2

Jupyter Notebook

NCGAS-cloud-workshop

NCGAS Cloud Workshop

psss-datasets

beyond-phylogenies-team6

vcf-4-population-genomics-team-phan

Jupyter Notebook

mlxai-2024-team-chen

beyond-phylogenies-team3

mlxai-2024-team-hall

Jupyter Notebook

MASCARA

A-DEEP-CONVOLUTIONAL-NEURAL-NETWORK-FOR-IDENTIFYING-THYROID-CANCER

Jupyter Notebook

ViraVate

RNAseq Reporting Designed for Clinical Deliverability

pubmed-codeathon-team4

Jupyter Notebook

asm-ngs-workshop

ASM NGS Workshop

Marker-Gene-Validator

Build a marker gene reference set

Jupyter Notebook

mlxai-2024-team-connor-gunti

Jupyter Notebook

Integrating-multi-omics-data-in-yeast

XXX is a all-inclusive pipeline we developed for multi-omics data analysis. XXX can take genomics, RNA-seq, proteomics and metabolomics data (for yeast) and integrate with Canonical Correlation Analysis and analyze by OPLS-DA for variables driving the differences between samples. Difference driving pathways then can then be visualized through visNetwork. Lastly, follow-up experiment guidance and be yielded through COBRA simulations with Yeast 8 database.

Jupyter Notebook

mlxai-2024-team-xu

Jupyter Notebook

vcf-4-population-genomics-team-elder

The_Virus_Index

A Federated Index of Virus Metadata and Hyperdata in Public Repositories

Diversifying-the-pipeline-for-identifying-bulk-RNA-seq-derived-biomarkers-of-cancer-risk-within-sing

MASQ

Quality control tool for metagenomic assemblies

GWAusage

Genomic Responses to Infectious Disease

lung-rna-seq

beyond-phylogenies-team4

SARS-CoV-2-host-genes

Characterization of SARS-CoV-2 host genes

vcf-4-population-genomics-team-nguyen

Automated-Figure-extraction-and-Tagging

Jupyter Notebook

airbending_isoseq

Taxonomy-specific-RPS-BLAST-part-I

Genes-in-the-Hood

Identify antiphage defense systems in the bacterial pangenome

single-cell-comparison

psss-team4

Protein-Variant-Impact-Score

nds1-team-2-design-package

USING-MACHINE-LEARNING-TO-IMPROVE-POST-ACUTE-REHABILITATION-PROCESS-FLOW

Jupyter Notebook

OPTICAL-COHERENCE-TOMOGRAPHY-ANGIOGRAPHY-IN-GLAUCOMA

amr-2024-team-sridharan

This repository contains tools and resources developed by Team Sridharan during the "Resistance is Futile: A Codeathon to Combat Antimicrobial Resistance" (September 2024), hosted by NCBI and NIAID.

amr-2024-team-dave

This repository contains tools and resources developed by Team Dave during the "Resistance is Futile: A Codeathon to Combat Antimicrobial Resistance" (September 2024), hosted by NCBI and NIAID.

Jupyter Notebook

bioed-2024-team-finlay

This repository contains curricular materials developed by Team Finlay during NCBI's BioEd Summit (August 2024).

SLEuth

Jupyter Notebook

Assessment-of-log-transformation-and-z-scores-for-scRNA-seq-data-analysis

Domain_HMM_Boundaries

Refining Domain Boundaries and Performing Large Scale Parsing

Jupyter Notebook

NOVEL-CLINICAL-PREDICTION-APPROACHES-TO-MANAGING-CARE-FOR-ACUTE-PULMONARY-EMBOLISM-PATIENTS

Jupyter Notebook

DEFINITION-OF-CELL-CYCLE-STATE-IN-LABEL-FREE-IMAGES

Jupyter Notebook

VirusGraphs3

Solidifying the VirusGraphs Infrastructure for Deployment

Jupyter Notebook

codeathon-info

beyond-phylogenies-team2

glaucoma-oct-scans

Jupyter Notebook

MONITORING-POST-OPERATIVE-HEAD-NECK-CANCER-PATIENTS-VIA-SELF-POWERED-SMART-INSOLES

HOPDARM

REAL-TIME-CARDIAC-ASSESSMENT-OF-CATHETERIZATION-DERIVED-FICK-AND-CMR-DERIVED-FLOW

ASAP

Automating-tools-to-search-and-analyze-large-genome-sequence-repositories

beyond-phylogenies-team1

Jupyter Notebook

pubmed-codeathon-team3

Jupyter Notebook

beyond-phylogenies-team5

ElasticBLAST-CoFest-BOSC-2021

A workspace for the BOSC 2021 CoFest virtual codeathon to explore the functionality of Elastic Blast at Scale and to improve documentation.

Taxonomy_Domain_Integration

Making a Domain Map Across Approximate Metagenomic Taxonomy.

SCANCNV

Creating an awesome tool to perform CNV QC on WES data independent of callers/platform that focuses on confidence and reportability of CNV calls, particularly in clinical data.

bioed-2024-team-mcclintock

This repository contains curricular materials developed by Team * during NCBI's BioEd Summit (August 2024).

curriculathon-team-template

team-chang-test

codeathon-team-template

bioed-2024-team-uchida

This repository contains curricular materials developed by Team Uchida during NCBI's BioEd Summit (August 2024).

vcf-4-population-genomics-team-aribi-fattouch