MrOlm/bacterialEvolutionMetrics

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Updated almost 2 years ago

MrOlm/bacterialEvolutionMetrics

MrOlm

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Scripts in support of publication

drep

Rapid comparison and dereplication of genomes

inStrain

Bioinformatics program inStrain

covid19_population_genomics

Analysis of the population diversity of SARS-CoV-2 within and between individual patients

Jupyter Notebook

pipeCoverage

Quickly calculate coverage of sequences in a .sam file while retaining breadth information

tRep

Quickly get the taxonomy of a genome

drep_instrain_tutorial

Tutorial for dRep and inStrain. Made for EBAME7

InfantEukaryotes

Notebooks supporting the publication "Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes"

Jupyter Notebook

glrestore

Easily restore objects from AWS glacier from the command line using python

nf-genomeresolvedmetagenomics

A nextflow pipeline to perform genome resolved metagenomics