MouseLand/EnsemblePursuit MouseLand/EnsemblePursuit

  • Stars
    star
    9
  • Rank 1,939,727 (Top 39 %)
  • Language
    Jupyter Notebook
  • License
    GNU General Publi...
  • Created over 5 years ago
  • Updated over 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
MouseLand/EnsemblePursuit
github

MouseLand

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Jupyter Notebook
1,344
star
2

Kilosort

Fast spike sorting with drift correction for up to a thousand channels
Python
452
star
3

suite2p

cell detection in calcium imaging recordings
Jupyter Notebook
344
star
4

rastermap

a visualization method for neural data
Python
172
star
5

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
Python
154
star
6

stringer-pachitariu-et-al-2018b

Responses of 10,000 neurons to 2,800 natural images
MATLAB
66
star
7

pykilosort

WIP: Python port of Kilosort2
Python
50
star
8

stringer-pachitariu-et-al-2018a

Recordings of 10k neurons during spontaneous behaviors
MATLAB
49
star
9

cellpose-napari

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
Python
46
star
10

stringer-et-al-2019

paper figure code
Python
25
star
11

receptivefield-explorer

GUI to compute and explore receptive fields, primarily from calcium imaging recordings
Jupyter Notebook
12
star
12

neuropop

analysis tools for large-scale neural recordings
Python
11
star
13

pachitariu-et-al-2018a

Benchmarking spike deconvolution without ephys
MATLAB
5
star
14

steinmetz2019_NMA

Jupyter Notebook
4
star
15

course-materials

Jupyter Notebook
3
star
16

cellpose_web

code for cellpose website
JavaScript
2
star
17

facemap-napari

napari plugin for facemap (www.github.com/mouseland/facemap) for processing behavioral data
Python
2
star