MonashBioinformaticsPlatform/iffyRna

Stars
1
Language
Python
License
Apache License 2.0
Created almost 6 years ago
Updated almost 6 years ago

MonashBioinformaticsPlatform/iffyRna

MonashBioinformaticsPlatform

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

tool to suss out iffy RNA molecules

RSeQC

fork of RSeQC python RNAseq metrics suit of tools

LFQ-Analyst

The repo for LFQ-Analyst

bio-ansible

Proof of concept to use ansible + Lmod to deploy a bioinformatics server

varistran

R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data

celaref

RNAsik-pipe

RNAsik - more than just a pipeline

learning-resource-links

An awesome list of learning resources for bioinformatics, genomics and computational biology

polyApipe

provean

Fork of Provean tool from : http://provean.jcvi.org

r-more

Further topics in R.

bioconda-tutorial

A quick overview of how to use Bioconda, and create recipes

Jupyter Notebook

r-intro

Introduction to R.

seqfish-hack

seqFISH+ data in tidy format for a mini-hackathon

rocker-ultra

Containerised RStudio with bells+whistles for HPC and everywhere

laxy

Laxy Genomics Pipelines

RNAseq-DE-analysis-with-R

ggscaleRanges

Functions to scale ggplot using transformations based on GRanges objects

slurry

A web accessible tool for looking at a Slurm queue and the associated priorities

2016-11-03-r-shiny

Introduction to the Shiny library, to be presented at ABACBS 2016

enrichment_analysis_workshop

A base for enrichment analysis workshop material

trimviz

Visualisation of trimming or soft-clipping of short sequence reads

PieScripts

This is directory with python script that some might find useful

laxyapi-r

Interace with the Laxy REST API in R. Download your job files.

R-ShinyIntro-MBP

https://monashbioinformaticsplatform.github.io/R-ShinyIntro-MBP/

15-07-swc-r

ansible-RNAsik-REST

2016-11-21-intro-python

Hands on Intro to Python Workshop Event Page

15-07-swc-r-intro-r

Software Carpentry, introduction to R, Monash Universrit, July 2015

RMIT_MBP_SCworkshop_Oct2019

Links to slides from todays workshop.

TCPseq

2016-06-01-intro-r

Introduction to R workshop to be held on 2016-06-01

intro-to-python-for-bioinformatics

An introductory workshop to teach basic Python with a bioinformatics flavour

Jupyter Notebook

2015-11-30-intro-r

Introduction to interactive R

Single-Cell-Workshop

Half day workshop with 10x

Proteomics-Intro-R-Workshop-2020

RNAseq_workshop_2024