MonashBioinformaticsPlatform/RNAseq_workshop_2024

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MonashBioinformaticsPlatform/RNAseq_workshop_2024

MonashBioinformaticsPlatform

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RSeQC

fork of RSeQC python RNAseq metrics suit of tools

LFQ-Analyst

The repo for LFQ-Analyst

bio-ansible

Proof of concept to use ansible + Lmod to deploy a bioinformatics server

varistran

R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data

celaref

RNAsik-pipe

RNAsik - more than just a pipeline

learning-resource-links

An awesome list of learning resources for bioinformatics, genomics and computational biology

polyApipe

provean

Fork of Provean tool from : http://provean.jcvi.org

r-more

Further topics in R.

bioconda-tutorial

A quick overview of how to use Bioconda, and create recipes

Jupyter Notebook

r-intro

Introduction to R.

seqfish-hack

seqFISH+ data in tidy format for a mini-hackathon

rocker-ultra

Containerised RStudio with bells+whistles for HPC and everywhere

laxy

Laxy Genomics Pipelines

RNAseq-DE-analysis-with-R

ggscaleRanges

Functions to scale ggplot using transformations based on GRanges objects

slurry

A web accessible tool for looking at a Slurm queue and the associated priorities

2016-11-03-r-shiny

Introduction to the Shiny library, to be presented at ABACBS 2016

enrichment_analysis_workshop

A base for enrichment analysis workshop material

trimviz

Visualisation of trimming or soft-clipping of short sequence reads

PieScripts

This is directory with python script that some might find useful

laxyapi-r

Interace with the Laxy REST API in R. Download your job files.

R-ShinyIntro-MBP

https://monashbioinformaticsplatform.github.io/R-ShinyIntro-MBP/

15-07-swc-r

ansible-RNAsik-REST

2016-11-21-intro-python

Hands on Intro to Python Workshop Event Page

15-07-swc-r-intro-r

Software Carpentry, introduction to R, Monash Universrit, July 2015

RMIT_MBP_SCworkshop_Oct2019

Links to slides from todays workshop.

TCPseq

2016-06-01-intro-r

Introduction to R workshop to be held on 2016-06-01

intro-to-python-for-bioinformatics

An introductory workshop to teach basic Python with a bioinformatics flavour

Jupyter Notebook

2015-11-30-intro-r

Introduction to interactive R

Single-Cell-Workshop

Half day workshop with 10x

iffyRna

tool to suss out iffy RNA molecules

Proteomics-Intro-R-Workshop-2020