ModelDBRepository/206364

1

190565

Supervised learning in spiking neural networks with FORCE training (Nicola & Clopath 2017)

MATLAB

15

2

144006

Grid cell spatial firing models (Zilli 2012)

MATLAB

4

3

247310

Adaptive dual control of deep brain stimulation in Parkinsons disease simulations (Grado et al 2018)

Python

4

4

266864

Multiplexed coding in Purkinje neuron dendrites (Zang and De Schutter 2021)

AMPL

3

5

141699

Basal ganglia-thalamic network model for deep brain stimulation (So et al. 2011)

MATLAB

3

6

118434

Odor supported place cell model and goal navigation in rodents (Kulvicius et al. 2008)

MATLAB

3

7

229278

Hierarchical Gaussian Filter (HGF) model of conditioned hallucinations task (Powers et al 2017)

MATLAB

3

8

150031

An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al., 2013)

Python

3

9

240369

First-Spike-Based Visual Categorization Using Reward-Modulated STDP (Mozafari et al. 2018)

C#

2

10

8115

Fluctuating synaptic conductances recreate in-vivo-like activity (Destexhe et al 2001)

AMPL

2

11

155856

Fractional leaky integrate-and-fire model (Teka et al. 2014)

MATLAB

2

12

263236

Mean-Field models of conductance-based NNs of spiking neurons with adaptation (di Volo et al 2019)

Python

2

13

243595

An oscillatory neural autoencoder based on frequency modulation and multiplexing (Soman et al 2018)

MATLAB

2

14

241932

Place and grid cells in a loop (Rennó-Costa & Tort 2017)

Python

1

15

35358

CA3 pyramidal cell: rhythmogenesis in a reduced Traub model (Pinsky, Rinzel 1994)

AMPL

1

16

188977

CA1 pyramidal cells, basket cells, ripples (Malerba et al 2016)

MATLAB

1

17

83319

Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007)

C++

1

18

182843

CA1 PV+ fast-firing hippocampal interneuron (Ferguson et al. 2013)

Python

1

19

184487

Memory savings through unified pre- and postsynaptic STDP (Costa et al 2015)

MATLAB

1

20

182758

Activity patterns in a subthalamopallidal network of the basal ganglia model (Terman et al 2002)

Python

1

21

244688

Channel density variability among CA1 neurons (Migliore et al. 2018)

AGS Script

1

22

218085

Hybrid oscillatory interference / continuous attractor NN of grid cell firing (Bush & Burgess 2014)

MATLAB

1

23

181035

FFV1MT: A V1-MT feedforward architecture for optical flow estimation (Solari et a., 2015)

MATLAB

1

24

84167

Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007)

MATLAB

1

25

232914

Modeling dendritic spikes and plasticity (Bono and Clopath 2017)

Python

1

26

238911

Neuromuscular network model of gut motility (Barth et al 2017)

Python

1

27

245529

Compartmental differences in cAMP signaling pathways in hippocam. CA1 pyr. cells (Luczak et al 2017)

Python

1

28

153196

Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012)

Jupyter Notebook

1

29

245424

Function and energy constrain neuronal biophysics in coincidence detection (Remme et al 2018)

MATLAB

1

30

189160

A detailed data-driven network model of prefrontal cortex (Hass et al 2016)

MATLAB

1

31

266535

Interplay between somatic and dendritic inhibition promotes place fields (Pedrosa & Clopath 2020)

Python

1

32

245071

Hippocampal CA1 pyramidal cell demonstrating dynamic mode switching (Berteau & Bullock 2020)

Python

1

33

168874

Neuronal dendrite calcium wave model (Neymotin et al, 2015)

AMPL

1

34

229276

Mirror Neuron (Antunes et al 2017)

AGS Script

1

35

225906

CRH modulates excitatory transmission and network physiology in hippocampus (Gunn et al. 2017)

Python

1

36

240960

CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018)

Python

1

37

84589

Extracellular Action Potential Simulations (Gold et al 2007)

MATLAB

1

38

258234

Inhibitory control of motoneuron excitability (Venugopal et al 2011)

MATLAB

1

39

244700

Response to correlated synaptic input for HH/IF point neuron vs with dendrite (Górski et al 2018)

Python

1

40

267499

A focal seizure model with ion concentration changes (Gentiletti et al., accepted)

AMPL

1

41

114685

GPi/GPe neuron models (Johnson and McIntyre 2008)

AMPL

1

42

188544

Parallelizing large networks in NEURON (Lytton et al. 2016)

Python

1

43

229640

Respiratory control model with brainstem CPG and sensory feedback (Diekman, Thomas, and Wilson 2017)

MATLAB

1

44

151404

Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012)

Python

1

45

3810

Spinal Motor Neuron (McIntyre et al 2002)

AMPL

1

46

181962

Model of eupnea and sigh generation in respiratory network (Toporikova et al 2015)

Python

1

47

185021

CA1 pyramidal neuron network model (Ferguson et al 2015)

Python

1

48

258846

Reaching movements with robust or stochastic optimal control models (Crevecoeur et al 2019)

MATLAB

1

49

258854

LCN-HippoModel: model of CA1 PCs deep-superficial theta firing dynamics (Navas-Olive et al 2020)

Python

1

50

148320

Circadian clock model in mammals (PK/PD model) (Kim & Forger 2013)

Mathematica

1

51

206397

In vivo imaging of dentate gyrus mossy cells in behaving mice (Danielson et al 2017)

Python

1

52

142630

Ion concentration dynamics as a mechanism for neuronal bursting (Barreto & Cressman 2011)

C

1

53

138951

Modular grid cell responses as a basis for hippocampal remapping (Monaco and Abbott 2011)

Python

1

54

82784

Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006)

AMPL

1

55

243448

Computational model of bladder small DRG neuron soma (Mandge & Manchanda 2018)

AMPL

1

56

120783

Generating oscillatory bursts from a network of regular spiking neurons (Shao et al. 2009)

C++

1

57

231818

GC model (Beining et al 2017)

AMPL

1

58

279

Low Threshold Calcium Currents in TC cells (Destexhe et al 1998)

GLSL

1

59

235054

Perfect Integrate and fire with noisy adaptation or fractional noise (Richard et al 2018)

1

60

150239

MEC layer II stellate cell: Synaptic mechanisms of grid cells (Schmidt-Hieber & Hausser 2013)

AMPL

1

61

184479

Neural Field Simulator (Nichols & Hutt 2012-2015)

Python

1

62

168867

Hierarchical network model of perceptual decision making (Wimmer et al 2015)

Python

1

63

152197

Simulated cortical color opponent receptive fields self-organize via STDP (Eguchi et al., 2014)

Python

1

64

126465

Spike-Timing-Based Computation in Sound Localization (Goodman and Brette 2010)

Python

1

65

184054

CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015)

AMPL

1

66

182784

Functional balanced networks with synaptic plasticity (Sadeh et al, 2015)

Python

1

67

234118

A spiking neural network model of the Lateral Geniculate Nucleus (Sen-Bhattacharya et al 2017)

Python

1

68

266774

Sequence learning via biophysically realistic learning rules (Cone and Shouval 2021)

MATLAB

1

69

144499

Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) (pylab)

Python

1

70

117361

Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)

MATLAB

1

71

266508

Kernel method to calculate LFPs from networks of point neurons (Telenczuk et al 2020)

Python

1

72

125290

Maximum entropy model to predict spatiotemporal spike patterns (Marre et al. 2009)

MATLAB

1

73

169985

NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013)

C++

1

74

243350

Model of the hippocampus over the sleep-wake cycle using Hodgkin-Huxley neurons (Aussel et al 2018)

Python

1

75

206232

Cortex-Basal Ganglia-Thalamus network model (Kumaravelu et al. 2016)

MATLAB

1

76

254217

Dendritic action potentials and computation in human layer 2/3 cortical neurons (Gidon et al 2020)

AMPL

1

77

244261

A full-scale cortical microcircuit spiking network model (Shimoura et al 2018)

Python

1

78

257747

Phenomenological models of NaV1.5: Hodgkin-Huxley and kinetic formalisms (Andreozzi et al 2019)

Python

1

79

136717

STDP allows fast rate-modulated coding with Poisson-like spike trains (Gilson et al. 2011)

Python

1

80

123623

Hodgkin-Huxley models of different classes of cortical neurons (Pospischil et al. 2008)

AMPL

1

81

42037

Effects of Acetyl-L-carnitine on neural transmission (Lombardo et al 2004)

Erlang

1

82

263711

Emergence of spatiotemporal sequences in spiking neuronal networks (Spreizer et al 2019)

Python

1

83

53425

Motoneuron simulations for counting motor units (Major and Jones 2005)

MATLAB

1

84

153988

Stable propagation of synchronous spiking in cortical neural networks (Diesmann et al 1999)

Python

1

85

206365

Subiculum network model with dynamic chloride/potassium homeostasis (Buchin et al 2016)

MATLAB

1

86

232096

Statistical Long-term Synaptic Plasticity (statLTSP) (Costa et al 2017)

MATLAB

1

87

120692

Sodium potassium ATPase pump (Chapman et al. 1983)

AMPL

1

88

244684

Optimal Localist and Distributed Coding Through STDP (Masquelier & Kheradpisheh 2018)

MATLAB

1

89

50997

Ribbon Synapse (Sikora et al 2005)

AMPL

1

90

93326

Classic model of the Tritonia Swim CPG (Getting, 1989)

AMPL

1

91

116491

NEURON + Python (Hines et al. 2009)

Python

1

92

39948

Artificial neuron model (Izhikevich 2003, 2004, 2007)

Python

1

93

244416

CA1 pyramidal neuron (Combe et al 2018)

PostScript

1

94

225095

COREM: configurable retina simulator (Martínez-Cañada et al., 2016)

C

1

95

82849

Neocortical pyramidal neuron: deep; effects of dopamine (Durstewitz et al 2000)

AMPL

1

96

267511

Biophysically detailed model of somatosensory thalamocortical circuit (Borges et al accepted)

Jupyter Notebook

1

97

97903

Determinants of fast calcium dynamics in dendritic spines and dendrites (Cornelisse et al. 2007)

MATLAB

1

98

144096

Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012)

MATLAB

1

99

147172

Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013)

Python

1

100

97985

Fully Implicit Parallel Simulation of Single Neurons (Hines et al. 2008)

Shell

1