MaastrichtU-IDS/docona

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MaastrichtU-IDS/docona

MaastrichtU-IDS

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DoConA (Document Content and Citation Analysis Pipeline) is an open source, configurable and extensible Python tool to analyse the level of agreement between the citation network of a set of textual documents and the textual similarity of these documents.

semanticscience

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.

jupyterlab

🪐 JupyterLab + VisualStudio Code workspaces for data science and knowledge graphs

dsri-documentation

📖 Documentation for the Data Science Research Infrastructure at Maastricht University

building-and-mining-knowledge-graphs-course-materials

This repository contains educational materials for a Masters course on knowledge graphs developed by the Institute of Data Science at Maastricht University

Jupyter Notebook

into-the-graph

🧭 Resolve, visualize and browse the content of any SPARQL endpoint

d2s-docs

📖 Home for the Data2Services project documentation

translator-openpredict

🔮🐍 A package to help serve predictions of biomedical concepts associations as Translator Reasoner API

Jupyter Notebook

federatedQueryKG

This repository is a workplace for COST Action Hackathon event on Federated Query over Knowledge Graphs which will happen on 25-27 April in Izmir Turkey.

Jupyter Notebook

perfect-graph

Create perfect graph visualisations easily

UM_KEN4256_KnowledgeGraphs

Resources for the KG course at IDS, Maastricht University

Jupyter Notebook

data2services-pipeline

⚠️ DEPRECATED. See http://d2s.semanticscience.org

fair-test

☑️ A library to build and deploy FAIR metrics tests APIs that can be used by FAIR evaluation services supporting the FAIRMetrics specifications, such as FAIR enough and the FAIR evaluator.

dsri-helm-charts

Helm charts for the Data Science Research Infrastructure at Maastricht University

fair-enough

♻️ Service to define and run evaluations of the FAIR principles (Findable, Accessible, Interoperable, Reusable) on online resources

fair-metadata-wizard

🧙‍♂️📝 JSON-LD web editor, with autocomplete based on the loaded ontologies concepts and properties

d2s-cli

⌨️ A Command Line Interface to help orchestrate the integration of heterogenous data sources under a common RDF Knowledge Graph using Python, RML mappings, Bash, and GitHub Actions workflows

UM_KEN3140_SemanticWeb

🎓 Resources for the Semantic Web course given by IDS at Maastricht University

Jupyter Notebook

predict-drug-target

Using ESM2 protein embeddings and MolecularTransformer drug embeddings to train a linear classifier to predict potential drug-targets interactions

OptimAL

Jupyter Notebook

clean-technologies-nlp

🌱 A qualitative and computational study using NLP on H2020 projects in the context of climate change

Jupyter Notebook

knowledge-collaboratory

🔬 Website to help browse and publish Nanopublications

cookiecutter-python-package

🍪🐍 A cookiecutter package to bootstrap python packages

MedicalLLM

This repository is for collecting and updating existing and upcoming LLM tools and papers focusing on healthcare and medicine domain.

food-claims-kg

🧅 RDF knowledge graph for food health claims

machine-learning-workshop

This repo is for Machine Learning Workshop (one episode of Data Science Community Workshop Series)

Jupyter Notebook

d2s-project-template

📋 Template to build CWL workflows to convert data to a RDF Knowledge Graph and deploy services.

Jupyter Notebook

crowdED

🤖 Guideline for designing optimal crowdsourcing experiments

code-server

🧑‍💻 VisualStudio Code server Docker image

apache-drill

🔩 Apache Drill

AutoR2RML

healthy-food-subs

Healthy food ingredient substitutions

Jupyter Notebook

cohort-explorer

🫀 Webapp to explore cohorts metadata for the iCARE4CVD project

dsri-workshop-start-app

⚡ Short workshop to start Data Science applications on the Data Science Research Infrastructure at Maastricht University

fair-enough-metrics

☑️ API to publish FAIR metrics tests written in python

d2s-core

🥝 Core repository with Docker, CWL, Argo scripts for the d2s tool

Common Workflow Language

neuro_dkg

Knowledge Graph for Neurological Disorders' Drugs

Jupyter Notebook

cbcm-ontology

⚖️ An OWL ontology to define terms from EU company law that are relevant for cross-border mobility of EU companies.

bio2rdf

⚕️ Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences.

Common Workflow Language

RdfUpload

📤 Simply upload RDF to a SPARQL endpoint with RDF4J

xml2rdf

📄 A simple XML to RDF converter

d2s-download

⚠️ DEPRECATED. Shell scripts to download datasets for the data2services project

shacl-shapes

Repository for SHACL Shapes at the Institute of Data Science at Maastricht University

coding-for-researchers

Resources for the Python workshop at IDS and UL, Maastricht University

Jupyter Notebook

Litcoin-NLP-Challenge

Jupyter Notebook

nanobench-templates

🛋️ Templates to publish Nanopublications in Nanobench

Jupyter Notebook

FaVLib

Fact Validation Library

LMKBC-2023

build-a-kg-example

A short tutorial to build a RDF Knowledge Graph from 2 CSV files using YARRRML mappings

best-practices

📚 Best practices at the Institute of Data Science at Maastricht University

biothingsprovenancemodel

A proposed specification for how to capture available provenance information for chemical assertions integrated by the BioThings API suite

Jupyter Notebook

fairificator

Tool to evaluate how FAIR is a resource URL using the F-UJI API

metadata-unsupervised-assessment

Quality Assessment of Biomedical Metadata Using Topic Modelling

Jupyter Notebook

graphdb

GraphDB inspired by https://github.com/manasRK/graphdb-free

semanticscience-website

Website for the Semanticscience Integrated Ontology (SIO)

incontext-indications-analysis

Relevant datasets and material for a preliminary analysis of the overlap in drug indications between InContext, DrugCentral and LabeledIn

Jupyter Notebook

PhDThesis

This repository is for sharing PhD thesis managing and writing. Our focus group is UM (FSE/DACS/IDS) PhD students.

d2s-argo-workflows

⚠️ DEPRECATED: Argo workflows to transform structured data to a target RDF using Data2Services Docker modules

crowdsourcing-workshop

Slides for the Workshop on Crowdsourcing

get-started-with-docker

🐳 A straightforward workshop to get started with Docker in an hour

data2services-ecosystem

⚠️ DEPRECATED. See http://d2s.semanticscience.org

solid-station

🚉⚕️ A SOLID Station for the Personal Health Train deployed using Docker

metadata-wizard

Jupyter Notebook

fairsharing-metrics

📊 Fairsharing metrics implementation

Jupyter Notebook

covid19-biomarker-discovery

🔬 This repository is to discover COVID-19 biomarkers using Knowledge Graph technologies

Jupyter Notebook

dsri-openshift-applications

🔭 DEPRECATED - Applications for the Data Science Research Infrastructure OpenShift cluster at Maastricht University

audioset-owl

🔊 A Jupyter Notebook to edit the AudioSet ontology

Jupyter Notebook

docker-workshop

🐳 Docker Workshop

Jupyter Notebook

responsability-matrix-survey

d2s-bash-exec

Execute Bash scripts from URL

workshop-ci

Workshop about CI/CD at the Institute of Data Science at Maastricht University

off-label-drug-indications-dataset

💊 A small dataset of off-label drug indications found in PubMed articles

play-fair

♟️ FAIR Data for Traditional Games

Jupyter Notebook

grid-api

Global Repository of Injury Data API

ldwizard-humanities

🪄 A LDWizard to generate RDF linked data from spreadsheets relevant to the Humanities and Social Sciences.

dqa-pipeline

Large-scale RDF-based Data Quality Assessment Pipeline

data-driven-justice

Data Driven Justice Challenge

Jupyter Notebook

fair-workshop

🧭 10th February 2021🧭 A repo for the first FAIR essential workshop at Maastricht University

d2s-scripts-repository

📜 Transformation scripts to build Data2Services knowledge graphs (SPARQL insert queries, RML mappings, Shell commands).

FedQuery2024

prodigy-drug-indication-annotation

A project that uses prodi.gy to train a classifier to perform drug indication annotation with their medical context

Jupyter Notebook

fair-data-publisher

📦 A template with instructions and script to publish your scientific structured data (spreadsheets, dataframes, JSON, databases) as FAIR data

semantic-enhancement

workshop-ci-template

Template to be used in the CI/CD workshop

brein-data-warehouse

rstudio

📈 RStudio with Shiny server Docker image

business-analytics

Business Analytics module part of Data Science certification

Jupyter Notebook

projects

🎬 Showcase website for IDS projects

sounds

An ontology for the description and classification of sounds

Jupyter Notebook

dsri-demo

Quick demo to use the DSRI for Data Science

Jupyter Notebook

perfect-graph-docs

predict-ad-notebooks

PredictAD notebooks to explore ADNI data

Jupyter Notebook

python-template

🐍 DEPRECATED - checkout the new https://github.com/MaastrichtU-IDS/cookiecutter-python-package

dqa_combine_statistics

UCMDrugClassification

Jupyter Notebook

case-law-analytics-app

LUCE

🧊 LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance.

Jupyter Notebook

RdfSink

🚰 RdfSink is a simple web service which accepts POST requests with RDF payload. It works with various RDF formats. The RDF format needs to be defined in the Content-Type Header.

data-science-bootcamp-pggm

Work materials for the Data Science Bootcamp at PGGM

KGRulEm

Fact Checking via Knowledge Graph Rules and Embeddings

Jupyter Notebook

fairscape-helm

⛵ Helm chart to deploy the FAIRscape framework on Kubernetes and OpenShift