Discover MIT-LCP/physionet-build Open Source project

Native Python WFDB package

2,326

wfdb-python

Code and website related to the eICU Collaborative Research Database

742

eicu-code

Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code

294

mimic-iv

Code, documentation, and discussion around the MIMIC-CXR database

255

mimic-cxr

Mapping the MIMIC-III database to the OMOP schema

236

mimic-omop

PLpgSQL

122

mimic-website

Website for the MIMIC Critical Care Database (currently version MIMIC-III)

CSS

mimic-workshop

Introduction to MIMIC-III, the Critical Care Database

Code repository for the critical data book

critical-data-book

Repository for the paper describing MIMIC-III

mimic-iii-paper

A collection of tools for working with the PhysioNet repository.

physionet

A python package for removing duplicate text in clinical notes or other documents

bloatectomy

TeX

oracle2postgres

Migrate data from an Oracle database to a Postgres database

Analysis of high resolution clinical data for COVID-19 patients

COVID-19

Resources for the Society of Critical Care Medicine (SCCM) Datathon

sccm-datathon

Cookbook of sql scripts for MIMIC-II

mimic-cookbook

SQLPL

mimic-iv-website

Website for MIMIC-IV

Materials for the BIDMC datathon (Sat 29 Feb 2020)

bidmc-datathon

Extracting consistent concepts from multiple databases

gossis

2019 Toronto Datathon https://www.tdothealthhack.com

2019_toronto_health_hack

Platform for annotating physiological waveform data.

waveform-annotation

Tutorials for the 2019 Aarhus Datathon

2019_aarhus_critical_data

Sample code for Hack Aotearoa 2023

hack-aotearoa

Data descriptor of the eICU Collaborative Research Database for submission to Scientific Data

eicu-data-paper

Materials for the Tokyo datathon (March 2019)

2019_tokyo_datathon

Repository for the IEEE BHI-BSN MIMIC-III Challenge

bhi-bsn-challenge

Website for critical-data

critical-data

CSS

PhysioNetChallengePublic

Public Software for the PhysioNet/CinC Challenge Series

The Shakespeare-Method repository contains the code we used to develop a new method to identify attributed and unattributed potential adverse events using the unstructured notes portion of electronic health records.

Shakespeare-Method

Course materials for BST209

bst209

Materials for 2019 HST953 Course.

2019-hst-953

The PhysioNet Data Use Agreement and License

license-and-dua

vancomycin-nephrotoxicity

Study in eICU-CRD about vancomycin and associated nephrotoxicity

LCP project investigating hyperdynamic ejection fraction in critically ill patients

hdlvef

Pip installable package containing helper functions for datathons

aline-mimic-iii

PLpgSQL

datathon-package

Content for the 2019 eICU/eRI Collaborative Research Workshop (23rd September 2019, Colorado)

philips-eicu-meeting-2019

Repository for Aline project with Doug and Leo

aline-mimic-ii

SQLPL

cvsim

CVSim: a cardiovascular simulator.

Java

mimic-and-eicu-talk

Overview of MIMIC-III and the eICU Collaborative Research Database

Identify predictive parameters for 28-day mortality using a genetic algorithm (GA) and Gaussian mixture models (GMM)

ga-gmm

SQLPL

2019_mlhc_workshop

Resources for our Workshop at the 2019 Machine Learning in Healthcare Conference

Not the official distribution of the MITRE deidentification toolkit.

mitre_deid_toolkit

Website for https://betterscience.mit.edu

better-science-ideathon

CSS

patienttracking

MIMIC II Patient Tracking

Materials for the eICU Collaborative Research Database tutorial at ACM-BCB 2017

eicu-website

Repository moved

ACM-BCB-2017

edema

mit-lcp.github.io

citation-tracker

Tools for tracking citations to MIMIC, PhysioNet etc.

Study on discharge delays in the MICU using the MIMIC-III database

mimic-callout

Automatically exported from code.google.com/p/ds-review

ds-review

Code to extract MIMIC data for the Northstar interactive visualization tool

northstar_mimic_visualization

querybuilder-issue

Public Issue tracker for the Query Builder repo

false-alarm-reduction

Code for building a model to reduce false alarms in the intensive care unit

A template repo for clinical studies

clinical-study-template

open-science-fair-2017

Repository for the Open Science Fair 2017 workshop

QueryBuilder configured to run on the AWS-EC2 instances.

QueryBuilder-AWS

JavaScript

downcast

Tools for unpacking and converting data from the DWC system

Presentations by LCP members

presentations

2019_hack_aotearoa_eicu

eICU workshop presented at Hack Aotearoa

Resources for the GOSSIS datathon in Pittsburgh

datathon-gossis

A Python package that facilities the conversion of clinical terminology between two different coding systems for interoperability.

cwmed

mimic-iv-datathon

Website for the LCP Laboratory https://lcp.mit.edu

lcp-website

Tutorials on using the MIMIC Waveform Database

mimic_wfdb_tutorials