MG-RAST/MG-RAST-Tools

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BSD 2-Clause "Sim...
Created almost 11 years ago
Updated over 3 years ago

MG-RAST/MG-RAST-Tools

MG-RAST

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Repository of script tools, examples, and contributed code for using the MG-RAST API

AWE

workflow and resource management system for bioinformatics data analysis

Shock

An object store for scientific data

MG-RAST

The MG-RAST Backend -- the API server

matR

Metagenomics Analysis Tools

pipeline

The MG-RAST pipeline

Common Workflow Language

kmerspectrumanalyzer

DRISEE

duplicate read inferred sequencing error estimator

MG-RASTv4

The MG-RAST frontend -- the JavaScript web site

M5nr

Skyport2

framework for large scale data management and reproducible multi-cloud workflow execution

MG-RAST-infrastructure

CoreOS/Fleet Infrastructure for MG-RAST

app-definitions-deprecated

dockerfiles, app-definitions and scripts to upload images to Shock

myM5NR

M5NRv2 -- non-redundant protein and rRNA database integration

Retina

JavaScript library used in MG-RAST and skycore

go-shock-client

go client library for Shock

mtfTools

prototype tool for working with GSC metagenome transport format

golib

ipy-mkmq

IPython Tools for analysis in MG-RAST KBase MatR QIIME

ShockNodejs

mtf

MG-RAST metagenomes in MTF format (prototype)

metazen

tech-report

MG-RAST manual and documentation

CWL-Tools

CWL Tool repository

Common Workflow Language

python-shock-client

command line client for Shock

mobedac

amplicon

Common Workflow Language

anl-seq-service

dockbuild

Tool to build docker images defined in yaml file

ebi-submitter

Tools for submitting public MG-RAST jobs to the EBI's ENA archive

autoskewer

Repository for wrapper scripts for adapter trimming of high throughput sequence data, mostly illumina.