LucaCappelletti94/ucsc_genomes_downloader LucaCappelletti94/ucsc_genomes_downloader

  • Stars
    star
    7
  • Rank 2,294,772 (Top 46 %)
  • Language
    Python
  • License
    MIT License
  • Created over 5 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
LucaCappelletti94/ucsc_genomes_downloader
github

LucaCappelletti94

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Python package to quickly download genomes from the UCSC.

More Repositories

1

lectures-notes

My latex notes on whatever I'm studying. All are available to the public, but please take them with a grain of salt and notify me in case of errors :)
TeX
66
star
2

pygifsicle

Python package wrapping the gifsicle library for editing and optimizing gifs.
Python
51
star
3

dictances

Distances and divergences between distributions implemented in the best way I found in python.
Python
41
star
4

silence_tensorflow

Simple python package to shut up Tensorflow warnings and logs.
Python
30
star
5

hyperloglog-rs

A Rust implementation of HyperLogLog trying to be parsimonious with memory.
Jupyter Notebook
21
star
6

bioinformatics_practice

The practice section of the UNIMI Bioinformatics course
Jupyter Notebook
18
star
7

plot_keras_history

A simple python package to print a keras NN training history.
Python
17
star
8

extra_keras_metrics

Additional training metrics integrated with the keras NN library.
Python
13
star
9

dict_hash

Simple python tool to hash dictionaries using both default hash and sha256.
Python
12
star
10

compress_json

The missing Python utility to read and write large compressed JSONs.
Python
12
star
11

barplots

Python package to easily make barplots from multi-indexed dataframes.
Python
7
star
12

pubmed_embedding

Building a pubmed graph, automatically.
Rust
5
star
13

sanitize_ml_labels

Simple python package to sanitize in a standard way ML-related labels.
Python
5
star
14

random_italian_person

Python package to generate an Italian person randomly.
Jupyter Notebook
5
star
15

lectures

A LaTeX documentclass for lecture notes.
TeX
5
star
16

adigraph

A tex package to draw automatically tex graphs.
TeX
5
star
17

minhash-rs

A Rust implementation of MinHash trying to be parsimonious with memory.
Jupyter Notebook
4
star
18

zipf

Small library to create and elaborate zipf distributions in python
Python
4
star
19

downloaders

Python package to handle download of multiple types of files.
Python
4
star
20

thesis_model_unimi

LaTeX thesis model for University of the Studies of Milan
TeX
3
star
21

transpose_dict

Simple python package to transpose python dictionaries.
Python
3
star
22

tinycrawler

Web crawler that uses multiprocessing and arbitrarily many proxies to traverse and download websites
Python
3
star
23

memory_time_tracker

Python tool to track the memory and time requirements of software.
Python
2
star
24

kg-biolink

A knowledge graph for the BioLink metadata standard
Jupyter Notebook
2
star
25

deflate_dict

Python package to deflate and re-inflate dictionaries.
Python
2
star
26

Master-in-Bioinformatics-and-Functional-genomics

Some exercises and example for the neural networks section of the course.
Jupyter Notebook
2
star
27

ringbell

Python package to play a sound when a task completes.
Python
2
star
28

covidxpert

Model to distinguish covid cases from viral pneumonia cases.
Python
2
star
29

encodeproject

Python package wrapping some of the encode project APIs.
Python
2
star
30

support_developer

Package designed to centralize messages to support my development work.
Python
2
star
31

snv_classifier

Project for the bioinformatics course of professor Valentini, Unimi.
Jupyter Notebook
2
star
32

unimi_unsubscribe

Simple package to stop receiving annoying emails from Unimi.
Python
2
star
33

biolink_embedding

Pipeline to compute embedding of textual descriptions associated to the Biolink model.
Python
2
star
34

wordnet_knowledge_graph

A Python pipeline converting the NLTK wordnet into a KG, with additional synonym pairs from dictionaries.
Jupyter Notebook
2
star
35

environments_utils

Utilities to identify which environments is your python script running within.
Python
1
star
36

ensmallen_experiments

Experiments on the EnsmallenGraph library.
Jupyter Notebook
1
star
37

visited-rs

Data structure to keep track of visited objects that does not require clearing for several iterations.
Rust
1
star
38

mascot-rs

A rust package to validate and process Mascot Generic Format (MGF) for fragmentation spectra.
Jupyter Notebook
1
star
39

random_csv_generator

Tool for rendering plausible real-life csv data.
Python
1
star
40

userinput

Simple python package to handle cli user input.
Python
1
star
41

right_laplacian_node2vec

Experiments evaluating the performance of Right Laplacian weighting in Node2Vec sampling.
Jupyter Notebook
1
star
42

heterogeneous_graphlets

Rust implementation of Heterogeneous Graphlets counting
Rust
1
star
43

understanding_actix_cookies

A small repo to understand an issue with Actix Cookies in some production settings.
Rust
1
star
44

ddd_subplots

Python package making it easier to handle mixed 3d and 2d subplots.
Python
1
star
45

greedy_grasp_ant

Small C project to highlight the similarities of Greedy, GRASP and Ant system algorithms.
C
1
star
46

random_dict

Simple python package to generate random dictionaries of given types.
Python
1
star
47

actix_yew_websockets

Learning how to make webworkers with Yew frontend and Actix backend
Rust
1
star
48

rust_file_progress

Rust package to dump progress information in a file.
Rust
1
star
49

spectral-similarities-evaluation

Experimental framework to evaluate spectral similarities
Python
1
star