LKremer/CAFE_fig

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59
Rank 508,233 (Top 11 %)
Language
Python
Created over 7 years ago
Updated about 5 years ago

LKremer/CAFE_fig

LKremer

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A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

ggpointdensity

📈 📊 Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

showTree

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

MSA_trimmer

Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

scbs

Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSCAn

TEcov

A pipeline to to determine the repeat content of genes and their neighboring regions.

AAV-screening

Code used in the screening for efficient AAV serotypes

CatanDice

Kivy smartphone app to simulate less erratic dice rolls for the Settlers of Catan card game.