KlugerLab/Scripts_Roulis_et_al_2020

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Created almost 5 years ago
Updated over 4 years ago

KlugerLab/Scripts_Roulis_et_al_2020

KlugerLab

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FIt-SNE

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

SpectralNet

Deep network that performs spectral clustering

ALRA

Imputation method for scRNA-seq based on low-rank approximation

t-SNE-Heatmaps

Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq

pyFIt-SNE

Python Wrapper for FIt-SNE

GeneTrajectory

R implementation of GeneTrajectory

DAseq

oocPCA

Out-of-Core Principal Component Analysis

GeneTrajectory-python

Python implementation of Gene Trajectory

Jupyter Notebook

Ritornello

Ritornello is a high fidelity control free ChIP-seq peak calling algorithm

ALRA-paper

adversarial-examples

Code to reproduce results in the paper "Defending against Adversarial Images using Basis Functions Transformations"

SIMVI

Jupyter Notebook

pcafast

Matlab implementation of a randomized algorithm for principal component analysis

FIt-SNE-paper

DAseq-paper

rpca-mkl

Implementation of randomized PCA using Intel MKL

batchEffectRemoval2020