Discover KitwareMedical/SlicerCustomAppTemplate Open Source project

Tool to anonymize DICOM files according to the DICOM standard

114

dicom-anonymizer

ITK module with classes particularly useful for ultrasound.

ITKUltrasound

A lightweight, cross-platform 2D/3D medical image viewer.

ImageViewer

A setup script to generate VTK Python Wheels

VTKPythonPackage

An implementation of morphological contour interpolation

tensorboard-plugin-3d

HTML

ITKContourInterpolation

These are a few examples for vtk.js

vtk.js-examples

Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

SlicerITKUltrasound

This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applications in medical image analysis and computer vision.

pyLAR

An open source library for streaming and preprocessing point-of-care ultrasound video.

ITKPOCUS

This repository contains an image-based instantaneous phase estimation method for gating and temporal super-resolution of cardiac ultrasound

CardiacUltrasoundPhaseEstimation

VesselView is a demonstration application from Kitware Inc for the segmentation, registration and analysis of tubes( e.g, blood vessels) in 3D images (e.g, MRI, CT and Ultrasound).

Deprecated-VesselView

Browser extension to open URL in Kitware online viewers

KitwareFileViewers

Kitware Course in Biomedical Image Analysis and Visualization: ITK

CourseInBiomedicalImageAnalysisAndVisualization

ITK Image IO for Scanco MicroCT .ISQ files

ITKIOScanco

Collection of vtk.js based cinematic rendering experiments.

vtk-js-cinematic-rendering-internship-2022-experiments

DICOM file converter in Python

dicom-exporter

Example Application for Slicer Customization - Generated from KitwareMedical/SlicerCustomAppTemplate

SlicerCAT

ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.

ITKStrain

Pattern-based morphometry for vascular analysis.

TubeTK-pypbm

C++ Wrapper for the C# SDK for Interson's Linear Array Probe

IntersonArraySDKCxx

3D Slicer extension to visualize and plan an osteotomy surgery.

OsteotomyPlanner

3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.

SlicerNNUnet

Cancer Diagnosis in Histology Images using Deep Learning and Persistence Homology

HistologyCancerDiagnosisDeepPersistenceHomology

Python Dynamical Systems Toolkit.

pydstk

Interactive ultrasound applications using streamed images from an Interson linear array probe.

UltrasoundIntersonApps

Slicer extension for automated segmentation of individual teeth in cone-beam CT dental scans using a deep-learning based approach.

SlicerCBCTToothSegmentation

High-throughput Applications for Skeletal Imaging

HASI

An extended version of ParaView Glance that supports an integrated python server, e.g., for running ITK algorithms...

paraview-glance-py

2019-ImageXD-Registration-Tutorial

Extension for 3D slicer that enables user to prototype real-time multi-modal surgical simulation scenarios by leveraging iMSTK

SlicerIMSTK

A demonstration of Cornerstone.js integration into ParaView Glance. Current version is an integration of VTK.js and OHIF.

Deprecated-paraview-glance-cornerstone

itkARGUS-DARPA-POCUS_AI-Archive

Collection of Skeletal Model Extensions for 3D Slicer/SlicerSALT

SlicerSkeletalRepresentation

CMake buildsystem for externally building any built-in or remote VTK module outside of the VTK source tree.

VTKExternalModule

AnatomicAugmentedRealityProjector

Desktop application for AI-based BPD risk analysis

lungair-desktop-application

Archive of an initial implementation exploration for VTK.JS + Python. Working version is ParaviewGlancePy

Deprecated-vtkVolViewVessels

Deprecated-UltrasoundSpectroscopyRecorder

Slicer module for Intelligent Virtual Surgical Planning

Slicer-CameraPath

A C++ Program for inferring the Cobb Angle of a Spinal Ultrasound in real time.

UltrasoundScoliosis

Better support for DICOM in ITK.

ITKDICOM

Animate a sequence of NRRD volumes in VTK

vtkColorCodedDepthVolume

Web application based on VolView for AI-based BPD risk analysis

lungair-web-application

Vue

SlicerMixedReality

A Slicer extension that enables user to interact with a Slicer scene using mixed reality headset.

Focused Assessment with Sonography for Trauma

UltrasoundIntersonApps-USpectScripts

Run-length encoded memory compression scheme for an itk::Image

ITKRLEImage

Extension for 3D slicer that enables user to visualize the 3D scene using the Looking Glass hardware display.

SlicerLookingGlass

Vessel viewer and extraction

Deprecated-pv-web-vessels

C++ Wrapper for the Interson C# SDK

IntersonSDKCxx

A Slicer extension for ITK's Python wrapping.

SlicerITKPython

Computation and visualization of time-regressed shapes in a collection of 3D shape inputs associated to a linear variable

ShapeRegressionExtension

HArmonization BEnchmarking Tool

habet

macOS shell script to extract, codesign, and re-packsign a dmg package. Also create a pkg installer.

slicer-macos-codesign-scripts

Shell

MONAI-GettingStarted

Slicer-based implementation of QREADS medical image viewer used at Mayo Clinic

SlicerQReads

Utilities for creating functional boxplots of 1D data

AtlasBuilder

IntersonManager

SOFA

Archive of an old library for viewing ITK Spatial Objects, Scenes, and such

Deprecated-SOViewer

End-user application to manipulate voxelized anatomical models using an underlying armature

Bender

Starter repo for vtk.js and vue.js

vtk-vue-starter

Pipelines are an extension for 3DSlicer that will offer the ability to create simple modules (aka pipelines) via a GUI interface with no coding knowledge needed.

SlicerPipelines

Source code of the site allowing to browse and download Slicer extensions. This site is published at extensions.slicer.org and maintained by @Kitware on behalf of the 3D Slicer community.

slicer-extensions-webapp

Vue

vpaw

A surgical planning software system targeted to pediatric patients with airway obstruction.

Python test runner extension for 3D Slicer based on PyTest and PyTest JSON Report

SlicerPythonTestRunner

http://www.insight-journal.org/browse/publication/775

ITKHigherOrderAccurateGradient

Methods for forming models of the vessels and airways of the lungs

MTEC-Clarius-OpenIGTLink

Java

ITKTubeTK-CTLungs

Slicer extension defining MRML nodes and operations for Skeletal Representations (SReps)

SlicerSRep2

A C++ program for exploring properties of RF Ultrasound images in real time

UltrasoundMeasurementExplorer

Anatomic Reconstruction for Generalizable UltraSound (ARGUS) AI: A library for point-of-care ultrasound AI using MONAI and ITK

itkARGUS

A Python-based workflow system with caching

Cleaver

steady

Archive of scripts used to test ITKTubeTK. Now ITKTubeTK exists as an ITK module, which provides its own testing infrastructure

Deprecated-ITKTubeTK-DashboardScripts

ITK remote module from an IJ article at http://www.insight-journal.org/browse/publication/915

ITKMultipleImageIterator

Slicer module to enable Slicer extension developers to constrain and synchronize markups and control points of different nodes.

SlicerMarkupConstraints