KasperSkytte/mmgenome2

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17
Rank 1,257,181 (Top 25 %)
Language
R
License
GNU Affero Genera...
Created almost 7 years ago
Updated 12 months ago

KasperSkytte/mmgenome2

KasperSkytte

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Tools for extracting individual genomes from metagenomes

ampvis2

Tools for visualising microbial community amplicon data

AutoTax

Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples

BASH_template

A simple BASH template script

ASV_pipeline

Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)

bioscripts

Miscellaneous bioinformatic helper scripts for various tasks

Amplicon-visualiser

A shiny app to visualise amplicon data, based on ampvis2

MasterThesis

My master thesis in Biotechnology as written with bookdown to integrate interactive plots. A PDF version is also available. CLICK THE LINK TO VIEW

MC-prediction

Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks

docker-pigz

Minimal Alpine linux image with pigz for multithreaded gzip

madsalbertsen-ampvis2