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ampvis2
Tools for visualising microbial community amplicon dataAutoTax
Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samplesmmgenome2
Tools for extracting individual genomes from metagenomesBASH_template
A simple BASH template scriptASV_pipeline
Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)bioscripts
Miscellaneous bioinformatic helper scripts for various tasksAmplicon-visualiser
A shiny app to visualise amplicon data, based on ampvis2MasterThesis
My master thesis in Biotechnology as written with bookdown to integrate interactive plots. A PDF version is also available. CLICK THE LINK TO VIEWMC-prediction
Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networksdocker-pigz
Minimal Alpine linux image with pigz for multithreaded gzipLove Open Source and this site? Check out how you can help us