KarrLab/gdoc_down

Stars
15
Rank 1,371,379 (Top 28 %)
Language
Python
License
MIT License
Created almost 9 years ago
Updated about 4 years ago

KarrLab/gdoc_down

KarrLab

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Command line programs to save Google documents to text and LaTeX files

de_sim

Python-based object-oriented discrete-event simulation tool for complex, data-driven modeling

latex-grant

LaTeX classes for formatting scientific documents, including US federal grant proposals.

intro_to_wc_modeling

Whole-cell modeling tutorials

datanator

Toolkit for discovering and aggregating data for whole-cell modeling

wc_rules

Rule-based modeling for whole-cell models.

wc_lang

Language for describing whole-cell models as reaction networks

conv_opt

Python package for linear and quadratic programming

obj_tables

Tools for creating and reusing high-quality spreadsheets

wc_model_gen

Framework for systematically and scalably designing whole-cell models from large datasets

bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

wc_sim

A multi-algorithmic simulator for whole-cell models

Jupyter Notebook

SynNetGen

Software to generate synthetic dynamic transcriptomic and proteomic data

wc_kb

Tools for building databases of experimental data for constructing whole-cell models

WcModelingTutorial

unitth

Python interface for UnitTH unit test history report generator

paper_2018_curr_opin_biotechnol

Code associated with the Karr Lab's 2018 whole-cell modeling review in Current Opinion in Biotechnology

wc_analysis

Tools for analyzing whole-cell knowledge bases, models, and simulation results

rand_wc_model_gen

Generate random whole-cell models

wc_onto

Ontology for whole-cell modeling

datanator_frontend

Graphical web-based interface for the Datanator toolkit for discovering data for modeling cells

examples_for_presentations

Examples for presentations

wc_utils

Utilities for whole-cell modeling such as logging, plotting, managing git repos, random number generation and others

wc_sandbox

A public jupyter notebook server for live documentation of karr lab packages