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ngseasy
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)DNAscan
DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.ADR-graph
Predicting adverse drug reactions from a knowledge graphbioindocker15
[Bio in Docker] Symposium 2015illumina-array-protocols
processing illumina SNP arraysredcap-docker
Dockerfile for building REDCap a secure web application for building and managing online surveys and databases. http://www.project-redcap.org/patient-flow-simulator
Manage a simulated hospital to understand patient flow bottlenecksNGS_Workshop_Advanced_Bioinformatics
PRSice
PRSice (pronounced 'precise') is a software package for calculating, applying, evaluating and plotting the results of polygenic risk scoresALSgeneScanner
Cognition-DNC
release machine readable text from word documents, images and other files, and de-identifyHipDynamicsR
HipDynamics is a data analytics middleware that allows you to slice multi-dimensional data sets according to a pre-defined context.ADRApp
MND-DataManagementAnalysis-System
Main repository of our data management and analysis system for ALS researchsurpi_container
SURPI Dockerfile:computational pipeline for pathogen identification from complex metagenomic next-generation sequencing (NGS) data generated from clinical samplesDockerEcosystem
A running list of Docker toolshackhour
Files for each hackhour topic... fork, beer, pizzaDGLinker-validation
Validation for the DGLinker webserverHipDynamics
osticket-docker
httpd-php7-ssl-docker
extending the base httpd server with php7 and opensslk8sworkflow
Workflows ontop of KubernettesNLP-embedding-visualisation
RetroSnake
RADAR-platform
The repository for work on the RADAR platform, a scalable, generic data harvesting pipeline for harvesting data from mobile phone sensors, IoT/Wearable devices etc. Remote Assessment of Disease and Relapse (RADAR) project. RADAR is a 22 million (11M European Funding and matched funding from EFPIA partners) European FP-7 initiative to pioneer mHealth remote monitoring capabilities in 3 key neurological disease areas: Depression, MS and Epilepsy.clozapine_adr_stats
statistical model analysis for clozapine adverse reaction predictionRADAR-scripts
Scripts for use with data collected by RADARsleepsight-analytics
Analysis pipeline of the SleepSight pilot study.radar-ingestion-platform
question_app
ALSMetaAnalysis2020
This is the repository with the material from 2020 ALS GWASSDQ
Multi-agent clinical trial generator for ADHD Patients. Uses Healthvaultbayesian-logistic-regression-r-shiny-app
This repository contains a GUI written in Rshiny to perform Bayesian Logistic regression analysis in R. The interface is based on the MCMClogit function from the MCMCpack package.bc-genetics
Workflows and tools for standard Genomic & Transcriptomic Analysis (SNP and Expression Arrays)Love Open Source and this site? Check out how you can help us