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ngseasy
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)DNAscan
DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.ADR-graph
Predicting adverse drug reactions from a knowledge graphbioindocker15
[Bio in Docker] Symposium 2015illumina-array-protocols
processing illumina SNP arraysredcap-docker
Dockerfile for building REDCap a secure web application for building and managing online surveys and databases. http://www.project-redcap.org/patient-flow-simulator
Manage a simulated hospital to understand patient flow bottlenecksNGS_Workshop_Advanced_Bioinformatics
PRSice
PRSice (pronounced 'precise') is a software package for calculating, applying, evaluating and plotting the results of polygenic risk scoresALSgeneScanner
Cognition-DNC
release machine readable text from word documents, images and other files, and de-identifyHipDynamicsR
HipDynamics is a data analytics middleware that allows you to slice multi-dimensional data sets according to a pre-defined context.ADRApp
MND-DataManagementAnalysis-System
Main repository of our data management and analysis system for ALS researchsurpi_container
SURPI Dockerfile:computational pipeline for pathogen identification from complex metagenomic next-generation sequencing (NGS) data generated from clinical samplesDockerEcosystem
A running list of Docker toolshackhour
Files for each hackhour topic... fork, beer, pizzaDGLinker-validation
Validation for the DGLinker webserverHipDynamics
chip_gx
Illumina Chip based Gene Expression Pipeline (QC, Normalization, Differential Expression)osticket-docker
httpd-php7-ssl-docker
extending the base httpd server with php7 and opensslk8sworkflow
Workflows ontop of KubernettesNLP-embedding-visualisation
RetroSnake
RADAR-platform
The repository for work on the RADAR platform, a scalable, generic data harvesting pipeline for harvesting data from mobile phone sensors, IoT/Wearable devices etc. Remote Assessment of Disease and Relapse (RADAR) project. RADAR is a 22 million (11M European Funding and matched funding from EFPIA partners) European FP-7 initiative to pioneer mHealth remote monitoring capabilities in 3 key neurological disease areas: Depression, MS and Epilepsy.clozapine_adr_stats
statistical model analysis for clozapine adverse reaction predictionRADAR-scripts
Scripts for use with data collected by RADARsleepsight-analytics
Analysis pipeline of the SleepSight pilot study.radar-ingestion-platform
question_app
ALSMetaAnalysis2020
This is the repository with the material from 2020 ALS GWASSDQ
Multi-agent clinical trial generator for ADHD Patients. Uses Healthvaultbayesian-logistic-regression-r-shiny-app
This repository contains a GUI written in Rshiny to perform Bayesian Logistic regression analysis in R. The interface is based on the MCMClogit function from the MCMCpack package.Love Open Source and this site? Check out how you can help us