Jfortin1/Jipito

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2
Language
R
Created over 9 years ago
Updated over 8 years ago

Jfortin1/Jipito

Jfortin1

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Personal R package

ComBatHarmonization

Harmonization of multi-site imaging data with ComBat

neuroCombat

Harmonization of multi-site imaging data with ComBat (Python)

MNITemplate

MNI152 Template

RAVEL

Intensity normalization of structural MRIs using RAVEL

neuroCombat_Rpackage

neuroCombat R package

TCGA_AB_Compartments

A/B compartments for 12 cancer types estimated from TCGA methylation data

HiC_AB_Compartments

EveTemplate

JHU-MNI-ss (Eve) Template

funnorm_repro

Funnorm reproducible analysis

shinyMethyl

Interactive visualization of Illumina methylation array data

scATAC_Compartments

A/B compartments from single-cell ATAC seq (scATAC)

crisprScore

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

tcgaR

Statistics_for_genomics

Lab material for Statistics for Genomics class

neuroCombatData

Example dataset for neuroCombat in R

compartments_repro

Reproducible analysis of the compartments paper

HiC_AB_Compartments_Mouse

bioc2015methylation

Bioconductor tutorial for 450k methylation arrays

crisprScoreData

Pre-trained models for the crisprScore package

crisprDesignData

arbalist

Migrating ArchR's core functionality to Bioconductor

crisprBase

Base functions and classes for CRISPR gRNA design

crisprDesign

Core functions for CRISPR design

crisprBowtie

Bowtie-based alignment of CRISPR gRNA spacer sequences

crisprDesignPaper

Manuscript and analyses for crisprDesign manuscript