JBEI/OMG

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3
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Created over 5 years ago
Updated almost 2 years ago

JBEI/OMG

JBEI

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Generate simulated -omics data for testing on Arrowland and EDD

ART

A machine learning tool to improve the effectiveness of strain engineering in synthetic biology

Jupyter Notebook

ice

Web based Registry platform for managing synthetic biological parts

KineticLearning

Learning Kinetic Models from Time Series Proteomics and Metabolomics Data

Jupyter Notebook

foldy

Foldy: a web-based platform for interactive protein structure analysis

prpr

edd

Repository of standardized biological experimental data and metadata

vectoreditor

Web based DNA sequence editing and analysis tool

jqmm

JBEI Quantitative Metabolic Modeling library

Jupyter Notebook

clusterCAD

A computational platform for type I modular PKS and NRPS design

dnada

DNAda is a web application that integrates the J5 DNA assembly software with robotic liquid handlers

MiSeqValPipeline

Sequence Validation Pipeline for JBEI

PIACE

Parallel Integration and Chromosomal Expansion of Metabolic Pathways Machine Learning Analysis

Jupyter Notebook

CASdesigner

A Web tool to help you design donor DNA cassettes for genomic integration

Jupyter Notebook

bayflux

Software tool for Bayesian genome scale 13C Metabolic Flux Analysis

Jupyter Notebook

casdesigner-web

Web app version of CASdesigner

dnassemble-gui

library_loading_concentration_prediction

A tool to predict library loading concentration from cluster density and bioanalyzer data.

Jupyter Notebook

limitfluxtocore

JBEI Limit Flux To Core (lftc) Python library

Jupyter Notebook

dna-constructor

parpar

biosensor_characterization_public

Code for MCMC Analysis of Transcription Factor Based Biosensors

Jupyter Notebook

bioflex

basebuddy

A web app for recoding genes by organism.

Jupyter Notebook