Discover InsightSoftwareConsortium/SimpleITKTutorialMICCAI2015 Open

Jupyter notebooks for learning how to use SimpleITK

1,244

SimpleITK-Notebooks

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

830

itkwidgets

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

575

ITKElastix

High performance spatial analysis in a web browser and across programming languages and hardware architectures

202

ITK-Wasm

193

ScientificImageAnalysisVisualizationAndArtificialIntelligenceCourse

A setup script to generate ITK Python Wheels

ITKPythonPackage

CMake

ITKSphinxExamples

Cookbook examples for the Insight Toolkit documented with Sphinx

An ITK module to compute 3D thickness

ITKThickness3D

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

ITKTubeTK

Sources for the ITKSoftwareGuide.

ITKSoftwareGuide

Vessel and tube centerline extraction

ITKMinimalPathExtraction

A staging location for patches to be pushed upstream to dcmtk.org.

DCMTK-old

Example Applications based on the Insight Toolkit ITK

ITKApps

Fast, Texture Feature Maps from N-Dimensional Images

ITKTextureFeatures

Scraped, buildable version of the wiki examples

ITKWikiExamples

ITK-OpenCV-Bridge-Tutorial

Hands-on tutorial on how to combine ITK with OpenCV

Structure preserving color normalization on H&E images using a reference image

ITKColorNormalization

A platform for image algorithm validation in public challenges.

covalic

This module contains classes that bridge ITK image processing and VTK visualization pipelines.

ITKVtkGlue

Get Your Brain Together Neuroimage Registration Workshops and Hackathons

GetYourBrainTogether

ITKGrowCut is a remote module for ITK. It segments a 3D image from user-provided foreground and background seeds.

ITKGrowCut

External Module for ITK, implementing Isotropic Wavelets and Riesz Filter for multiscale phase analysis.

ITKIsotropicWavelets

Generate a new application based on itk.js, vtk.js and react.js.

create-itk-app

An ITK ImageIO module for the OpenSlide library.

ITKIOOpenSlide

InsightJournal

Insight Journal

Smoothing while preserving edges and coherent structures in images with anisotropic diffusion using lattice basis reduction

ITKAnisotropicDiffusionLBR

A module for the Insight Toolkit (ITK) that provides a generic, modular, and extensible architecture for lesion sizing algorithms in medical images as well as a reference algorithm for lung solid lesion segmentation in CT images.

LesionSizingToolkit

External Module for Total Variation Algorithms, providing wrap for https://github.com/albarji/proxTV

ITKTotalVariation

ITK IO for images stored in OME-Zarr format.

ITKIOOMEZarrNGFF

ITKv4-TheNextGeneration-Tutorial

What is new in ITKv4

VkFFT backends for ITK FFT classes.

ITKVkFFTBackend

File IO with itk for napari.

napari-itk-io

ITK filters that quantify bone morphometry

ITKBoneMorphometry

Convert an ITK Mesh to a simple data structure compatible with vtk.js PolyData

ITKMeshToPolyData

A framework for distributed large-scale image registration

itk-dreg

Provides the GitHub pull request status link to the CDash dashboard for the pull request's builds.

ITKGitHubCDashStatus

Template of Technical Report to be submitted to the Insight Journal

InsightJournalTemplate

ITKNDReg

Thin Shell Demons Mesh Registration

ITKThinShellDemons

ArrayFire-backed ITK pipelines

ITKArrayFire

A collection of Jupyter Notebooks to be used as instructional material for SPIE 2016 course.

SimpleITKTutorialSPIE2016

This ITK module contains a filter that generates component images from an itk::Image of itk::Vector, itk::CovariantVector, or itk::SymmetricSecondRankTensor.

ITKSplitComponents

Fast implementation of BilateralFilter. From the [Insight Journal]( https://www.insight-journal.org/browse/publication/692)

ITKFastBilateral

Hands on Exercises used in ITK Tutorials

ITKTutorialExercises

A UI frontend based on React Bootstrap

itk-viewer-bootstrap-ui

A repository of scripts to set up an ITK development environment.

ITKDevelopmentEnvironment

SaltStack

xstate-lit

XState Web Component Reactive Selector Controller

ITK filters accelerated with OpenCL via [clEsperanto](https://clesperanto.github.io/).

ITKCLEsperanto

Website sources for The Retrospective Image Registration Evaluation Project (RIRE)

RIREWebsite

HTML

ITKIOTransformDCMTK

An ITK module to read DICOM spatial transforms.

ITK IO for images stored in mgh, mgz and mgh.gz formats.

ITKMGHImageIO

Multi-dimensional web-based image, mesh, and point set viewer

itk-viewer

This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.

ITKBioCell

ITK Python filters accelerated with cuCIM

itk_cucim

Convert between itk and napari data structures.

itk-napari-conversion

Classes for ITK triangle mesh subdivision

ITKSubdivisionQuadEdgeMeshFilter

Training grounds for Next Generation of ITK Community Members

ITKBarCamp

This repository provides the CI deployment files.

ITKContinuousIntegration

ITK filters to reduce ring artifacts common in x-ray computed tomography.

ITKRingArtifact

A plugin for craco to use itk.js with create-react-app.

craco-itk

SimpleITK workshop material for the 2015 ImageJ Conference. http://imagej.net/Conference_2015

SimpleITKWorkshopImageJ2015

A composite GitHub Action to build, test, and package, ITK remote modules

ITKRemoteModuleBuildTestPackageAction

itk-viewer-material-ui

A Material UI interface for itk-viewer

Fast Point Feature Histogram

ITKFPFH

This remote module contains classes and support classes for the calculation of artificial neural networks. This can be used, for instance, for image classification.

ITKNeuralNetworks

Color maps for itk-viewer

itk-viewer-color-maps

An ITK module to read and write High-throughput JPEG2000 (HTJ2K) images.

ITKIOOpenJPH

Icons for `itk-viewer` user interfaces

itk-viewer-icons

Real-world tests to benchmark ITK performance.

ITKPerformanceBenchmarking

ITK-MICCAI-LevelSets

dam

Data Archive Manager

Implement's Glenn Pierce's itk::FDFImageIO as an ITK Remote Module

ITKIOFDF

Implementations of ITK spatially-aware filters in PyTorch

ITKPyTorch

SimpleITKTutorialSPIE2017

This tool is a simple command line application that reads two images and compares their content. It has a built-in degree of tolerance, so the images don't have to be identical pixel by pixel.

ITKImageCompare

Approximate an image's gradient from a b-spline fit to its intensity

ITKBSplineGradient

Classes to perturb ITK mesh objects with Gaussian noise

ITKMeshNoise

Tools to monitor and visualize ITK registration and other optimization processes

ITKOptimizationMonitor

Visualization application for the performance benchmarks

ITKPerformanceVisualization

ITKTrimmedPointSetRegistration

Sources for insightsoftwareconsortium.org website

insightsoftwareconsortium.org

GitHub Action to check for consistency with ITK's Coding Style

ITKClangFormatLinterAction

ITK module for reading meshes from SWC files, a human- and machine-readable format for representing neuron morphologies

ITKIOMeshSWC

A module for ITK to transform from cartesian to polar coordinate systems and back.

ITKPolarTransform

ITKTestingData

ITK Testing Data Mirror

Configuration scripts for ITK's Jenkins build robots.

ITKBuildRobot

PowerShell

ITKEntropyBasedIntensityCorrection

Homogenize intensity across an image with exposure bias when it contains few intensity states

ITK Doxygen nightly built with GitHub Actions and published to GitHub Pages

ITKDoxygen

History of testing data for itk-wasm

itk-wasm-testing-data

ITKRobustPredicate

A wrapper around Jonathan Shewchuk's Robust Predicate code. http://www.cs.cmu.edu/~quake/robust.html

ITKApplyClangFormatAction

GitHub Action to apply clang-format on a PR when a label is applied.

Default GitHub community health files

.github

cmake-w3-externaldata-upload

CMake Web3 ExternalData Upload UI

Interface to interactively edit opacity transfer functions, etc

itk-viewer-transfer-function-editor