InsightSoftwareConsortium/ITK-Wasm

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Created about 9 years ago
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InsightSoftwareConsortium/ITK-Wasm

InsightSoftwareConsortium

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High performance spatial analysis in a web browser and across programming languages and hardware architectures

itk-wasm

itk-wasm combines ITK and WebAssembly to enable high-performance spatial analysis in a web browser, Node.js, Python, and reproducible execution across programming languages and hardware architectures.

The project provides tools to a) build C/C++ code to WebAssembly, b) bridge local filesystems, JavaScript/TypeScript/Python data structures, and traditional file formats, c) transfer data efficiently in and out of the WebAssembly runtime, and d) asynchronous, parallel execution of processing pipelines in a worker pool. itk-wasm can be used to execute ITK or arbitrary C++ codes in the browser, on a workstation / server with Node.js or Python, or standalone execution and wrapped in WASI runtimes.

For more information, please see the project documentation.

ITK

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

SimpleITK-Notebooks

Jupyter notebooks for learning how to use SimpleITK

Jupyter Notebook

itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

ITKElastix

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

ScientificImageAnalysisVisualizationAndArtificialIntelligenceCourse

Jupyter Notebook

ITKPythonPackage

A setup script to generate ITK Python Wheels

ITKSphinxExamples

Cookbook examples for the Insight Toolkit documented with Sphinx

Jupyter Notebook

ITKThickness3D

An ITK module to compute 3D thickness

ITKTubeTK

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

ITKSoftwareGuide

Sources for the ITKSoftwareGuide.

ITKMinimalPathExtraction

Vessel and tube centerline extraction

DCMTK-old

A staging location for patches to be pushed upstream to dcmtk.org.

ITKApps

Example Applications based on the Insight Toolkit ITK

SimpleITKTutorialMICCAI2015

SimpleITK tutorial at the 2015 MICCAI conference

ITKTextureFeatures

Fast, Texture Feature Maps from N-Dimensional Images

ITKWikiExamples

Scraped, buildable version of the wiki examples

ITK-OpenCV-Bridge-Tutorial

Hands-on tutorial on how to combine ITK with OpenCV

ITKColorNormalization

Structure preserving color normalization on H&E images using a reference image

covalic

A platform for image algorithm validation in public challenges.

ITKVtkGlue

This module contains classes that bridge ITK image processing and VTK visualization pipelines.

GetYourBrainTogether

Get Your Brain Together Neuroimage Registration Workshops and Hackathons

Jupyter Notebook

ITKGrowCut

ITKGrowCut is a remote module for ITK. It segments a 3D image from user-provided foreground and background seeds.

ITKIsotropicWavelets

External Module for ITK, implementing Isotropic Wavelets and Riesz Filter for multiscale phase analysis.

create-itk-app

Generate a new application based on itk.js, vtk.js and react.js.

ITKIOOpenSlide

An ITK ImageIO module for the OpenSlide library.

InsightJournal

Insight Journal

ITKAnisotropicDiffusionLBR

Smoothing while preserving edges and coherent structures in images with anisotropic diffusion using lattice basis reduction

LesionSizingToolkit

A module for the Insight Toolkit (ITK) that provides a generic, modular, and extensible architecture for lesion sizing algorithms in medical images as well as a reference algorithm for lung solid lesion segmentation in CT images.

ITKTotalVariation

External Module for Total Variation Algorithms, providing wrap for https://github.com/albarji/proxTV

ITKIOOMEZarrNGFF

ITK IO for images stored in OME-Zarr format.

ITKv4-TheNextGeneration-Tutorial

What is new in ITKv4

ITKVkFFTBackend

VkFFT backends for ITK FFT classes.

Jupyter Notebook

napari-itk-io

File IO with itk for napari.

ITKBoneMorphometry

ITK filters that quantify bone morphometry

ITKMeshToPolyData

Convert an ITK Mesh to a simple data structure compatible with vtk.js PolyData

itk-dreg

A framework for distributed large-scale image registration

ITKGitHubCDashStatus

Provides the GitHub pull request status link to the CDash dashboard for the pull request's builds.

InsightJournalTemplate

Template of Technical Report to be submitted to the Insight Journal

ITKNDReg

ITKThinShellDemons

Thin Shell Demons Mesh Registration

ITKArrayFire

ArrayFire-backed ITK pipelines

SimpleITKTutorialSPIE2016

A collection of Jupyter Notebooks to be used as instructional material for SPIE 2016 course.

Jupyter Notebook

ITKSplitComponents

This ITK module contains a filter that generates component images from an itk::Image of itk::Vector, itk::CovariantVector, or itk::SymmetricSecondRankTensor.

ITKFastBilateral

Fast implementation of BilateralFilter. From the [Insight Journal]( https://www.insight-journal.org/browse/publication/692)

ITKTutorialExercises

Hands on Exercises used in ITK Tutorials

itk-viewer-bootstrap-ui

A UI frontend based on React Bootstrap

ITKDevelopmentEnvironment

A repository of scripts to set up an ITK development environment.

xstate-lit

XState Web Component Reactive Selector Controller

ITKCLEsperanto

ITK filters accelerated with OpenCL via [clEsperanto](https://clesperanto.github.io/).

RIREWebsite

Website sources for The Retrospective Image Registration Evaluation Project (RIRE)

ITKIOTransformDCMTK

An ITK module to read DICOM spatial transforms.

ITKMGHImageIO

ITK IO for images stored in mgh, mgz and mgh.gz formats.

itk-viewer

Multi-dimensional web-based image, mesh, and point set viewer

ITKBioCell

This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.

itk_cucim

ITK Python filters accelerated with cuCIM

itk-napari-conversion

Convert between itk and napari data structures.

ITKSubdivisionQuadEdgeMeshFilter

Classes for ITK triangle mesh subdivision

ITKBarCamp

Training grounds for Next Generation of ITK Community Members

ITKContinuousIntegration

This repository provides the CI deployment files.

ITKRingArtifact

ITK filters to reduce ring artifacts common in x-ray computed tomography.

craco-itk

A plugin for craco to use itk.js with create-react-app.

SimpleITKWorkshopImageJ2015

SimpleITK workshop material for the 2015 ImageJ Conference. http://imagej.net/Conference_2015

ITKRemoteModuleBuildTestPackageAction

A composite GitHub Action to build, test, and package, ITK remote modules

itk-viewer-material-ui

A Material UI interface for itk-viewer

ITKFPFH

Fast Point Feature Histogram

ITKNeuralNetworks

This remote module contains classes and support classes for the calculation of artificial neural networks. This can be used, for instance, for image classification.

itk-viewer-color-maps

Color maps for itk-viewer

ITKIOOpenJPH

An ITK module to read and write High-throughput JPEG2000 (HTJ2K) images.

itk-viewer-icons

Icons for `itk-viewer` user interfaces

ITKPerformanceBenchmarking

Real-world tests to benchmark ITK performance.

ITK-MICCAI-LevelSets

dam

Data Archive Manager

ITKIOFDF

Implement's Glenn Pierce's itk::FDFImageIO as an ITK Remote Module

ITKPyTorch

Implementations of ITK spatially-aware filters in PyTorch

SimpleITKTutorialSPIE2017

Jupyter Notebook

ITKImageCompare

This tool is a simple command line application that reads two images and compares their content. It has a built-in degree of tolerance, so the images don't have to be identical pixel by pixel.

ITKBSplineGradient

Approximate an image's gradient from a b-spline fit to its intensity

ITKMeshNoise

Classes to perturb ITK mesh objects with Gaussian noise

ITKOptimizationMonitor

Tools to monitor and visualize ITK registration and other optimization processes

ITKPerformanceVisualization

Visualization application for the performance benchmarks

ITKTrimmedPointSetRegistration

insightsoftwareconsortium.org

Sources for insightsoftwareconsortium.org website

ITKClangFormatLinterAction

GitHub Action to check for consistency with ITK's Coding Style

ITKIOMeshSWC

ITK module for reading meshes from SWC files, a human- and machine-readable format for representing neuron morphologies

ITKPolarTransform

A module for ITK to transform from cartesian to polar coordinate systems and back.

ITKTestingData

ITK Testing Data Mirror

ITKBuildRobot

Configuration scripts for ITK's Jenkins build robots.

ITKEntropyBasedIntensityCorrection

Homogenize intensity across an image with exposure bias when it contains few intensity states

ITKDoxygen

ITK Doxygen nightly built with GitHub Actions and published to GitHub Pages

itk-wasm-testing-data

History of testing data for itk-wasm

ITKRobustPredicate

A wrapper around Jonathan Shewchuk's Robust Predicate code. http://www.cs.cmu.edu/~quake/robust.html

ITKApplyClangFormatAction

GitHub Action to apply clang-format on a PR when a label is applied.

.github

Default GitHub community health files

cmake-w3-externaldata-upload

CMake Web3 ExternalData Upload UI

itk-viewer-transfer-function-editor

Interface to interactively edit opacity transfer functions, etc