INM-6/Python-Module-of-the-Week

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Created about 8 years ago
Updated about 1 year ago

INM-6/Python-Module-of-the-Week

INM-6

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multi-area-model

A large-scale spiking model of the vision-related areas of macaque cortex.

viziphant

Visualization of electrophysiological data from Elephant

networkunit

A SciUnit library for validation testing of spiking neural network models.

nnmt

Neuronal Network Meanfield Toolbox - official documentation: https://nnmt.readthedocs.io

hybridLFPy

Biophysics-based prediction of LFPs from point-neuron networks

beNNch

Modular performance benchmarking framework for neural network simulations

closed-loop-learning-in-autonomous-agents

Simulation and analysis scripts for "A closed-loop toolchain for neural network simulations of learning autonomous agents".

nestrl-tutorial

python-odmltables

An interface to convert odML structues to and from table-like representations, such as spreadsheets

swan

Swan (Sequential Waveform Analyzer) is an open-source graphical tool for tracking single units across multiple sessions of electrophysiological data that was recorded using chronically implanted microelectrode arrays.

reproducing-polychronization

lif_meanfield_tools

LIF Meanfield Tools

correlation-toolbox

Collection of functions to investigate correlations in spike trains and membrane potentials

Builder

Compile scripts for local installs of software packages

python-gymz

gymz provides a light-weight wrapper for the OpenAI Gym to allow interaction with reinforcement-learning environments via ZeroMQ sockets.

neural_network_meanfield

beNNch-models

PyNEST models for performance benchmarking with beNNch

viziphant-new

Visualization of Elephant

SAS

Assessing the similarity of real matrices with arbitrary shape.

SPADE_applications

Repository containing code necessary to reproduce the results of Stella, A., Quaglio, P., Torre, E., & Grün, S. (2019). 3d-SPADE: Significance Evaluation of Spatio-Temporal Patterns of Various Temporal Extents. Biosystems

h5py_wrapper

A wrapper to conveniently store nested python dictionaries in hdf5 files.

BNN_course_pub

beNNch-plot

Plotting styles for beNNch

pcp_use_cases

incapy

Interactive Neural Correlation Analyzer for Python

narci

narci is an ontology for calcium imaging experiments.

Jupyter Notebook

datareport

Tool to combine YAML datasets with Jinja2-based templates