INCF/neuroscience-data-structure

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Python
Created about 4 years ago
Updated over 1 year ago

INCF/neuroscience-data-structure

INCF

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Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to the idea of BIDS in neuroimaging

eeg-database

EEG/ERP portal enables community researchers to store, update, download and search data and metadata from EEG/ERP experiments. The system is developed as a standalone product; the database access is available through a web interface.

neuroshapes

Open schemas for F.A.I.R. neuroscience data

MUSIC

MUSIC, the MUltiSimulation Coordinator

BrainImagingPipelines

nineml-spec

Specification of the NineML model description language.

artem-is

https://incf.github.io/artem-is/

Scalable-Brain-Atlas

Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)

niQC

NeuroImaging Quality Control (niQC)

csa

The Python implementation of the Connection-Set Algebra

xnnppx

XNAT-NiPype-pyxnat

neurohdf

Unifying neuroscientific data types with HDF5

ProvenanceLibrary

ids-tools

INCF Dataspace utilities

libneurosim

Common interfaces for neuronal simulators

ImageRegistration

Registration of microscopy images to atlases

pykCSD

Object oriented Python kernel current source density toolbox

nineml-python

A Python library for reading, parsing, validating and writing the 9ML (http://nineml.net) object model

Computational-Neurosciences-Ontology--C.N.O.-

HAWG-examples

HAWG example JSON files

3d-printing-of-brain-regions

Goal is to arrive at a pipeline that takes an MRI scan of a human or animal brain, processes and segments it, and produces a collection of 3d printable files that clip together.

Vectorization-of-brain-atlases

Output of the GSOC project 'real time vectorization of brain atlases', see http://incf.org/gsoc/2014/real-time-vectorization-of-brain-atlases

XCEDE

eeg2

WDAT

Web Data Analysis Tool

incf.dai

p3-validator

Performs validation of odd-ball paradigm data using P300 classification

swc-specification

Information about the SWC file specification

apine

incf-interactive-viewer-plugin

INCF Interactive Viewer Plugin

one_click

One Click Sharing

old_nineml_repo

knowledge-space

KnowledgeSpace (KS) is a data-driven encyclopedia and search engine for the neuroscience community.

ansible-dataspace

Ansible roles for INCF DataSpace: http://www.incf.org/resources/data-space

nineml-catalog

A collection of 9ML example component classes

example-live-scripts

dai-api-wsgi

neurological_disorder_CDE

Common Data Elements for different Neurological Disorder

dsni

discuss.incf.org

libcsa

A CSA library implemented in C++

fair-metadata-sig

dbclient

Drop Box Client for ImageJ Repo 2

bids-validator

Placeholder. This content has moved to https://github.com/bids-standard/bids-validator

incf-map

NineML_demo_2016

nap

neuroinformatics app platform

2019-10-17-sfn

bids-validator-common

Programming language agnostic components of the bids-validator

bids-toolbox

minds-schema

2017-11-09-sfn