INCATools/dead_simple_owl_design_patterns

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Python
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GNU General Publi...
Created over 10 years ago
Updated over 2 years ago

INCATools/dead_simple_owl_design_patterns

INCATools

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A simple system for specifying OWL class design patterns for OBO-ish ontologies.

ontology-development-kit

Bootstrap an OBO Library ontology

ontology-access-kit

Ontology Access Kit: A python library and command line application for working with ontologies

Jupyter Notebook

ubergraph

Integrated OBO ontology store

semantic-sql

SQL and SQLite builds of OWL ontologies

boomer

Bayesian OWL ontology merging

dosdp-tools

Utility for working with DOSDP design patterns and OWL ontologies

obographviz

Customizable translation of OBO graphs to dot for visualization using graphviz and other tools

whelk

Whelk is an OWL EL reasoner

kgcl-rdflib

Tools for working with KGCL

relation-graph

Materialize OWL existential relations

kgcl

Datamodel for KGCL (Knowledge Graph Change Language)

whelk-rs

Whelk is an OWL EL reasoner

ontobot-change-agent

A GitHub bot for modifying ontology resources.

intelligent-concept-assistant

oakx-grape

Experimental OAK plugin for Grape

environments2wikidata

Mapping of GAZ and ENVO to Wikidata

fantom5-ontology

ontology categorizing samples from FANTOM5 project

Web Ontology Language

ontology-term-usage

determines how an ontology term has been used

table-editor

Lightweight CSV/TSV editor that supports autocomplete and is guided by a DOSDP-aware YAML configuration.

neoplasmer

Neoplasm Entity Recognition: matching disease names to ontology classes

rdf_matcher

swi rdf_matcher

pandasaurus_cxg

Ontology enrichment tool for CxG standard AnnData files

Jupyter Notebook

biosample-analysis

analysis of biosamples in INSDC

Jupyter Notebook

term-expando

Command line expansion of IDs and controlled terms in documents

oakx-plugin-cookiecutter

cookiecutter for OAK plugins

owl_patternizer

generate DOSDP patterns from OWL ontologies

PandaSaurus

Supporting simple queries over ontology annotations in dataframes, using UberGraph queries

rdf-sql-bulkloader

whelk-paper

Code for Whelk performance analyses

verificado

oakx-robot

robot plugin for OAK

figtools

Scala toolkit for analyzing figshare figures