• Stars
    star
    2
  • Language
    Python
  • License
    Apache License 2.0
  • Created over 1 year ago
  • Updated 8 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Supporting simple queries over ontology annotations in dataframes, using UberGraph queries

More Repositories

1

ontology-development-kit

Bootstrap an OBO Library ontology
Jinja
216
star
2

ontology-access-kit

Ontology Access Kit: A python library and command line application for working with ontologies
Jupyter Notebook
118
star
3

ubergraph

Integrated OBO ontology store
Makefile
42
star
4

dead_simple_owl_design_patterns

A simple system for specifying OWL class design patterns for OBO-ish ontologies.
Python
40
star
5

semantic-sql

SQL and SQLite builds of OWL ontologies
Python
37
star
6

boomer

Bayesian OWL ontology merging
Scala
26
star
7

dosdp-tools

Utility for working with DOSDP design patterns and OWL ontologies
Scala
23
star
8

obographviz

Customizable translation of OBO graphs to dot for visualization using graphviz and other tools
JavaScript
23
star
9

whelk

Whelk is an OWL EL reasoner
Scala
20
star
10

kgcl-rdflib

Tools for working with KGCL
Python
15
star
11

relation-graph

Materialize OWL existential relations
Scala
13
star
12

kgcl

Datamodel for KGCL (Knowledge Graph Change Language)
Python
11
star
13

whelk-rs

Whelk is an OWL EL reasoner
Rust
11
star
14

ontobot-change-agent

A GitHub bot for modifying ontology resources.
Python
10
star
15

intelligent-concept-assistant

5
star
16

oakx-grape

Experimental OAK plugin for Grape
Python
5
star
17

environments2wikidata

Mapping of GAZ and ENVO to Wikidata
Makefile
5
star
18

fantom5-ontology

ontology categorizing samples from FANTOM5 project
Web Ontology Language
5
star
19

ontology-term-usage

determines how an ontology term has been used
Python
4
star
20

table-editor

Lightweight CSV/TSV editor that supports autocomplete and is guided by a DOSDP-aware YAML configuration.
JavaScript
4
star
21

neoplasmer

Neoplasm Entity Recognition: matching disease names to ontology classes
Prolog
4
star
22

rdf_matcher

swi rdf_matcher
Prolog
3
star
23

pandasaurus_cxg

Ontology enrichment tool for CxG standard AnnData files
Jupyter Notebook
3
star
24

biosample-analysis

analysis of biosamples in INSDC
Jupyter Notebook
3
star
25

term-expando

Command line expansion of IDs and controlled terms in documents
Python
2
star
26

oakx-plugin-cookiecutter

cookiecutter for OAK plugins
Python
2
star
27

owl_patternizer

generate DOSDP patterns from OWL ontologies
Prolog
2
star
28

rdf-sql-bulkloader

Python
1
star
29

whelk-paper

Code for Whelk performance analyses
Scala
1
star
30

verificado

Python
1
star
31

oakx-robot

robot plugin for OAK
Python
1
star
32

figtools

Scala toolkit for analyzing figshare figures
Scala
1
star