Discover HumanBrainProject/openMINDS_ephys Open Source project

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HumanBrainProject

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A metadata model for capturing in-depth descriptions of electrophysiology experiments.

openMINDS

openMINDS comprises a set of metadata models for research products in the field of neuroscience.

Shell

hbp-neuromorphic-client

Python client for the Human Brain Project Neuromorphic Computing Platform

Python

neuroglancer-scripts

Conversion of neuroimaging data for display in Neuroglancer

Python

openMINDS_core

The openMINDS core metadata model is comprised of schemas that can be used to describe the general origin, location and content of research products.

ebrains-neuromorphic-job-queue-api

Code for the remote-access API of the EBRAINS/HBP Neuromorphic Computing Platform

Python

jsdoc-sphinx

JSDoc to ReST documentation, ready to be processed by Sphinx Doc

JavaScript

seafile-compose

A Docker Compose setup for Seafile

Dockerfile

openMINDS_SANDS

A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.

Python

pyunicore

UNICORE REST bindings for python

Python

pyxus

Python API for Nexus

Python

ebrains-drive

Python client interface for HBP Collaboratory Seafile storage

Python

openMINDS_controlledTerms

Metadata model for the consistent registration of well-defined terms as well as a corresponding library of terminologies (including links to ontological terms where applicable).

nehuba

TypeScript

kg-search

The knowledge graph search

Java

hbp-validation-framework

Python

swcPlus

Extended SWC neuron morphology file format

HTML

hbp-sphinx-theme

A Sphinx theme for doc integrated in the HBP Collaboratory

CSS

olfactory-bulb-3d

Python

kg-core-sdks

A python wrapper for the KG core API incl. token handling

HTML

hbp-data-schemas

Repository of data standards and schemas

landmark-reg

Landmark based registration of brain imaging volumes

JavaScript

kg-core

The KG core contains the fundamental logic to manage the Knowledge Graph.

Java

kg-search-ui

DEPRECATED! Search UI for Knowledge Graph

JavaScript

ep_oauth2

Etherpad Lite OAuth2 authentication provider based on passeport.js

JavaScript

openMINDS_generator

Python

hbp_archive

A high-level API for interacting with the Human Brain Project archival storage at CSCS

Python

hbp-spatial-backend

An HTTP backend for transforming coordinates and data between the core template spaces of the HBP

Python

atlas_core_lib

Wrapper library for the atlas core rest api

Python

kg-editor

JavaScript

hbp-quickfire

HBP QuickFire's goal is to provide a set of useful react components that let you build a consistent user interface with very little boilerplate code.

JavaScript

angular-hbp-collaboratory

AngularJS services to interface with HBP Collaboratory

JavaScript

kg-query-builder

TypeScript

kg-query-api

A new query API for the Knowledge Graph

Java

neural-activity-resource

Code for the Neural Activity Resource

JavaScript

knowledgegraph

This is a repository to exchange information, ask questions, create issues and feature requests for the knowledgegraph of HBP.

hbp-service-client

Clients for HBP Collaboratory Services

Python

clb-gulp-angular-template

A Project template to build application for the HBP Collaboratory using Gulp and Angular 1.5

JavaScript

kg-statistics

UI and scripts for Nexus Graph Visualization

JavaScript

openMINDS_instances

The openMINDS_instances repository contains well defined metadata representations (JSON-LDs) that are most likely to be reused across different research products.

PyJuGEx

Python

neuromorphic-benchmarks-service

Python

hbp-collaboratory-doc-example

Example documentation project

JavaScript

ActionPerceptionCoupling

MATLAB

servicehub

Python

data-handling-tutorial

Jupyter Notebook

openMINDS_wizard

Openminds wizard

JavaScript

clb-jupyterhub-openshift

Python

secure-data-store

Helper scripts for managing GoCryptFS images

Python

clb-s2i-jupyterhub

Jupyterhub image based on s2i + cryptography package

morph-syn-val

JavaScript

neuroglancer-docker

Dockerized web server for Neuroglancer and pre-computed images

kg-service

DEPRECATED! core source code of kg-service - a scala play application for KG handling

Scala

kg-scripts

Python

clb-nb-utils

Collaboratory Jupyter Notebook Utils

Python

selenium-grid

Ansible playbook to create a selenium grid platform

Shell

clb-authenticator

Python

cortical-voluba

VoluBA backend for non-linear depth-informed alignment of cortical patches

Python

coallocation-slurm-plugin

hbp-react-ui

A library of useful user-interface components built with React and MobX

JavaScript

hbp.hello.js

module to use HBP as a provider for hello.js

JavaScript

collaboratory_app

Collaboratory App Template for the CodeJam7

JavaScript

voluba-linear-backend

HTTP backend for estimating linear spatial transformations from a list of point landmarks

Python

hbp-collaboratory-theme

A Bootstrap 3 Theme for HBP Collaboratory Extensions

HTML

hbp-bsp-service-account

Rest API service allowing HBP Collaboratory developers to submit jobs, on behalf of HBP Collaboratory users, on HPC systems

Python

hbp-collaboratory-app-toolkit

A Javascript toolkit to interface a web application with the HBP Collaboratory

JavaScript

openMINDS_specimenPrep

A metadata model capturing in-depth descriptions of specimen preparations.

openid_http_client

The OpenId HTTP client manages the authentication of requests against token-protected API interfaces including the support of refresh token strategies.

Python

kujudrivespawner

A JupyterHub Spawner for Kubernetes which adds a Seadrive Sidecar container to the user's pod to mount the user's Collaboratory.Drive.

Python

HumanBrainProject/openMINDS_ephys

HumanBrainProject

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