HolyLab/Imagine HolyLab/Imagine

  • Stars
    star
    1
  • Language
    C++
  • Created almost 9 years ago
  • Updated about 1 year ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
HolyLab/Imagine
github

HolyLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

A graphical interface for recording with OCPI microscopes.

More Repositories

1

HolyLabRegistry

Julia package registry for the Holy lab at Washington University in St. Louis
Julia
17
star
2

RegisterQD.jl

Image registration with the QuadDIRECT optimization algorithm
Julia
13
star
3

FlyThroughPaths.jl

Create "fly-throughs" in 3d visualization
Julia
11
star
4

RegisterDeformation.jl

Representation of spatial deformations
Julia
7
star
5

GPCRAnalysis.jl

Routines for analysis of protein structures
Julia
7
star
6

BlockRegistration.jl

Deformable image registration via shift-alignment of blocks
Julia
6
star
7

ClusteringBenchmarks.jl

Data sets and metrics to evaluate clustering algorithms
Julia
5
star
8

GaussianRandomVariables.jl

Math (second-order accuracy) with random variables
Julia
5
star
9

ImagineHardware.jl

Access hardware information for essential microscope components used in OCPI microscopes: piezo positioners, amplifiers, cameras, etc
Julia
4
star
10

ZWarpedArrays.jl

An image array type for which each 2D slice can (lazily) undergo a different affine coordinate transformation
Julia
4
star
11

CachedArrays.jl

Arrays that cache elements in leading dimensions
Julia
4
star
12

FastScanning.jl

Determine camera/laser timing during fast OCPI acquisitions based on measured hardware responses.
Julia
4
star
13

RegisterMismatch.jl

This package is separated from BlockRegistraton.
Julia
3
star
14

InterleavedImages.jl

Lazy interleaving of images (arrays) along a chosen dimension
Julia
2
star
15

RegisterOptimize.jl

This package is separated from BlockRegistraton.
Julia
2
star
16

ExtractPSF.jl

Find point emitters in images and extract point spread functions
Julia
2
star
17

RFFT.jl

In-place real FFTs for Julia
Julia
2
star
18

ImagineInterface.jl

Read and write Imagine analog and digital recordings and commands
Julia
2
star
19

GsvdInitialization.jl

Discovery of "missing" directions in nonnegative matrix factorization
Julia
2
star
20

NMFMerge.jl

Merging components in nonnegative matrix factorization
Julia
2
star
21

RegisterWorkerShell.jl

This package is separated from BlockRegistratonScheduler.
Julia
1
star
22

EconomicChoice.jl

Utilities for analyzing neuroeconomic choice experiments
Julia
1
star
23

ImaginePlots.jl

Plotting of Imagine's hardware signals (complements ImagineInterface)
Julia
1
star
24

Diffusion.jl

Simulations of diffusion on the disc with boundary conditons
Julia
1
star
25

ImagineProcedures.jl

Link preparation with analysis of Imagine recordings
Julia
1
star
26

EcoTrialStructure.jl

Data import for experiments on neuroeconomic decision-making
Julia
1
star
27

ImageInterpLast.jl

Lazy interpolation of images along the last dimension (usually time)
Julia
1
star
28

StitchDPI.jl

Align and stitch pairs of images acquired with a split field of view
Julia
1
star
29

RegisterPenalty.jl

This package is separated from BlockRegistraton.
Julia
1
star
30

BlockRegistrationScheduler.jl

Multi-core image registration scheduler
Julia
1
star
31

WarpedImageSeries.jl

Lazy warping of a series (usually timeseries) of images
Julia
1
star
32

RegisterCore.jl

Image registration (low-level types and utilities)
Julia
1
star
33

Imagine.jl

Work-in-progress translation of Imagine to Julia
Julia
1
star
34

FastScanningAndDPI

Directory of code for OCPI fast scanning / DPI publication
1
star
35

RegisterWorkerApertures.jl

This package is separated from BlockRegistratonScheduler.
Julia
1
star
36

CachedInterpolations.jl

CachedInterpolations implements a performance enhancement for quadratic interpolation of a large multidimensional array. This package is separated from BlockRegistration
Julia
1
star