Discover HenrikBengtsson/CostelloPSCNSeq Open Source project

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Created about 8 years ago
Updated almost 4 years ago

HenrikBengtsson

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R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data

future

🚀 R package: future: Unified Parallel and Distributed Processing in R for Everyone

916

progressr

三 R package: An Inclusive, Unifying API for Progress Updates

254

future.apply

🚀 R package: future.apply - Apply Function to Elements in Parallel using Futures

200

matrixStats

R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors)

191

startup

🔧 R package: startup - Friendly R Startup Configuration

150

Wishlist-for-R

Features and tweaks to R that I and others would love to see - feel free to add yours!

127

speedtest-cli-extras

📶 Tools to enhance the speedtest-cli network tools

Shell

120

parallelly

R package: parallelly - Enhancing the 'parallel' Package

111

R.matlab

R package: R.matlab

future.batchtools

🚀 R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools

doFuture

🚀 R package: doFuture - Use Foreach to Parallelize via Future Framework

R.utils

🔧 R package: R.utils (this is *not* the utils package that comes with R itself)

dirdf

R package: dirdf - Extracts Metadata from Directory and File Names

future.callr

🚀 R package future.callr: A Future API for Parallel Processing using 'callr'

R.cache

♻️ R package: R.cache - Fast and Light-weight Caching (Memoization) of Objects and Results to Speed Up Computations

profmem

🔧 R package: profmem - Simple Memory Profiling for R

ucsf-vpn

Linux command-line client to manage a UCSF VPN connection

Shell

globals

🌐 R package: Identify Global Objects in R Expressions

listenv

R package: listenv - Environments Behaving As Lists

dotfiles-for-R

My dotfiles for R, e.g. .Rprofile and .Renviron

R.rsp

📄 R package: Dynamic generation of scientific reports

R.oo

R package: R.oo - R Object-Oriented Programming with or without References

brother-ptouch-label-printer-on-linux

How to print to a Brother P-touch (PT) label printer on Linux

Lua

R.devices

🎨 R package: Unified Handling of Graphics Devices

shellcheck-repl

Validation of Shell Commands Before Evaluation

Shell

future.mapreduce

[EXPERIMENTAL] R package: future.mapreduce - Utility Functions for Future Map-Reduce API Packages

port4me

🆓 port4me - Get the Same, Personal, Free TCP Port over and over

Shell

marshal

R package: marshal - Framework to Marshal Objects to be Used in Another R Processes

TopDom

R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes

git-bioc

:octocat: LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync

Shell

article-bengtsson-future

H. Bengtsson, A Unifying Framework for Parallel and Distributed Processing in R using Futures, The R Journal, 10.32614/RJ-2021-048, 2021

TeX

future.tests

🔩 R package: future.tests - Test Suite for Future API Backends

future.clustermq

🚀 R package future.clustermq: A Future API for Parallel Processing using 'clustermq'

aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

fake-hdf5r

R package: hdf5r - Fake, Dummy, Non-Working 'hdf5r' Package for 'Seurat' Users

future-tutorial-user2022

Tutorial: An Introduction to Futureverse for Parallel Processing in R (useR! 2022)

RNativeAPI

R package: RNativeAPI - Documentation and Examples of the R Native API (Proof of Concept)

future.BatchJobs

🚀 R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]

PSCBS

🔬 R package: Analysis of Parent-Specific DNA Copy Numbers

BiocParallel.FutureParam

🚀 R package: BiocParallel.FutureParam - Use Futures with BiocParallel

Makefile

affxparser

🔬 R package: This is the Bioconductor devel version of the affxparser package.

C++

illuminaio

🔬 R package: This is the Bioconductor devel version of the illuminaio package.

x86-64-level

x86-64-level - Get the x86-64 Microarchitecture Level on the Current Machine

Shell

future.aws.lambda

R package: future.aws.lambda - A Future API for Parallel Processing on AWS Lambda

conda-stage

conda-stage: Stage a Conda Environment on Local Disk

Shell

ThinkpadX1-Windows10-Middle_mouse_button_issue

AutoHotkey

teeny

🐣 R package: teeny - A Minimal, Valid, Complete R Package

rcli

R package: rcli - R Command-Line Interface Extras

easycatfs

easycatfs - Easy Mounting of Slow Folders onto Local Disk

Shell

pkgdown.extras

R package: pkgdown.extras: Enhancing the 'pkgdown' Package

TopDomData

R package: TopDomData - Data for the TopDom Package

environments

[experimental] R package: environments - Working with Environments and Closures in R

fix.connections

R package: fix.connections - Workarounds for Deficiencies in R's Built-in Connections [PROTOTYPE]

jottr.org-blogdown

JottR - Some Jotter on R

HTML

git-r

A Git Extension Making it Easier to Build R from Source

Shell

revdepcheck.extras

R package: revdepcheck.extras - Reverse-Dependency Checks from the Command Line (CLI)

r-base-centos7

Docker container image: Centos 7 with R (UNDER CONSTRUCTION)

R.filesets

R package: R.filesets - Easy Handling of and Access to Files Organized in Structured Directories

trackers

PROTOTYPE: trackers - Track Changes in R

CBI-software

A Scientific Software Stack for HPC (CentOS oriented)

Makefile

R_CRAN_Booster

Chrome Extension: R CRAN Booster - adds useful annotations to CRAN package pages

JavaScript

drat

R package repository

RGitHubAPI

dotfiles-for-emacs

Dot files for Emacs

Emacs Lisp

bash-startup

Bash Startup utility functions

Shell

markin

markin - The Markdown Injector

Shell

AutoHotkey-scripts

AutoHotkey

docker-spark-r

aroma.cn

🔬 R package: aroma.cn

aroma.agilent

🔬 R package: aroma.agilent [DORMANT]

R.batch

R package: R.batch [DEPRECATED]

R.lang

R.package: R.lang [DEPRECATED]

r-mirrors

Mirror CRAN and Bioconductor repositories on the local file system for R package installaions without internet access

Makefile

covr-utils

[LEGACY] Enhancements for covr making it even easier to do assess source-code coverage of R package tests

amazonlinux-r-minimal

Docker Hub Image: docker pull henrikbengtsson/amazonlinux-r-minimal

future.api.tests

[PLANNED] R package future.api.tests: Conformance Tests for the Future API

calmate

🔬 R package: calmate - Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation

LinuxEnvironmentModules

R package: LinuxEnvironmentModules - An R API to Linux Environment Modules

Affx-Fusion-SDK

🔬 Affymetrix Fusion Software Developers Kit (SDK)

C++

aroma.core

🔬 R package: aroma.core - Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework

HenrikBengtsson/CostelloPSCNSeq

HenrikBengtsson

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